PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen11g029480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | YABBY | ||||||||
Protein Properties | Length: 141aa MW: 16011.2 Da PI: 10.4097 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 179.2 | 2.4e-55 | 2 | 135 | 32 | 170 |
YABBY 32 fkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqr 124 +++vtvrCGhC+++lsvn+ q+l+ ++ ++l+ ++ + +++++n+k + ++++s+s+ ++ + s + e+ pr+pp irP ekrqr Sopen11g029480.1 2 LTLVTVRCGHCANMLSVNIGSLIQALPLQDV--QKLQRQQYTNVENNSSNYKAYGSSSSSSSKFNRYS--SIVSPENEPRIPP-IRPLEKRQR 89 689*************************996..56666667777777777777766666665555543..5666778899999.9******** PP YABBY 125 vPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 vPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Sopen11g029480.1 90 VPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 135 ********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.6E-55 | 1 | 135 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.14E-8 | 78 | 128 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.2E-5 | 87 | 127 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MLTLVTVRCG HCANMLSVNI GSLIQALPLQ DVQKLQRQQY TNVENNSSNY KAYGSSSSSS 60 SKFNRYSSIV SPENEPRIPP IRPLEKRQRV PSAYNRFIKE EIQRIKASNP DISHREAFST 120 AAKNWAHFPH IHFGLKLEGN K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU557674 | 0.0 | EU557674.1 Solanum lycopersicum FAS protein (fasciated) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015058841.1 | 1e-101 | putative axial regulator YABBY 2 | ||||
Swissprot | Q9XFB0 | 5e-53 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | B2YHV8 | 1e-90 | B2YHV8_SOLLC; FAS protein | ||||
STRING | Solyc11g071810.1.1 | 2e-91 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 4e-44 | YABBY family protein |
Publications ? help Back to Top | |||
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