PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g028220.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 336aa    MW: 36682.9 Da    PI: 9.1396
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g028220.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.11.3e-19220253134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Sopen11g028220.1 220 CTHCEVTKTPQWREGPLGPKTLCNACGVRYRSGR 253
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.6E-15214264IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.358218250IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.6E-14219251IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.28E-14219277No hitNo description
CDDcd002029.21E-17219276No hitNo description
PfamPF003202.0E-17220253IPR000679Zinc finger, GATA-type
PROSITE patternPS003440220245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTMVEHGGGY MDEIPTGPIV DDDFDDILNF LDMPMESLEG DGLGGVEWDV SESKGFGPIP  60
TEALMDFPPL PQSNIGNRRV NAVANSHPPI KFTEVQGTGT FQTQSPVSVL EGSNSCSGGK  120
SVPIKHDPVI PVRPRSKRAR PSAVNPWVLM APISSTRVAS KKISDARKTK ERRRRLSLLS  180
GAKEPMKNYV QQISDAAPPV SNVSKKKITS TQQSSFFKKC THCEVTKTPQ WREGPLGPKT  240
LCNACGVRYR SGRLFPEYRP AASPTFVPSV HSNSHRKVVE MRKKTLYGGA GEVEEPPKVI  300
MGRSSEALPE PTIAADPAMS PAPEFVPMSS YLFDVY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058777.10.0GATA transcription factor 11 isoform X2
RefseqXP_027768854.10.0GATA transcription factor 11 isoform X1
TrEMBLA0A3Q7JPP20.0A0A3Q7JPP2_SOLLC; Uncharacterized protein
STRINGSolyc11g069510.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.25e-40GATA transcription factor 11