PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g021070.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 690aa    MW: 80150.4 Da    PI: 5.8327
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g021070.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.75e-141922611487
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         l++p +fa++ ++++   k ++l +e+g +W v++  + +++r ++++GW eF k+n++ +g+++ Fkl++ 
  Sopen11g021070.1 192 TYLTIPIRFAKRTNIVNM--KNMRLVNEEGIRWGVEI--EYTKRRAIIKRGWTEFRKDNKIATGETCRFKLIQG 261
                       4599******99998855..57***************..8888889************************9863 PP
2B336.58.6e-124255011698
                       EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  16 lvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        ++p  fae+h   ++       + l+ ++g+ Wev++  + ++g+++l+kGWkeF +   + ++  ++F+++ r+ f   v++f 
  Sopen11g021070.1 425 TRIPPVFAESHckdML-----NHVFLQAPHGKAWEVEV--EHSQGQIWLAKGWKEFSDFYAISVKQLLMFTYNARDHF--DVTIFG 501
                       579********54333.....36***************..9*******************************998888..777775 PP
3B343.94.3e-146046731487
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         l++p +fa++ ++++   k ++l +e+g +W v++  + +++r ++++GW eF k+n++ +g+++ Fkl++ 
  Sopen11g021070.1 604 TYLTIPIRFAKRTNIVNM--KNMRLVNEEGIRWGVEI--EYTKRRAIIKRGWTEFRKDNKIATGETCRFKLIQG 673
                       4599******99998855..57***************..8888889************************9864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-17177266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-16177266IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.744179273IPR003340B3 DNA binding domain
CDDcd100173.76E-10180261No hitNo description
SMARTSM010191.4E-7182276IPR003340B3 DNA binding domain
PfamPF023625.5E-12191261IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15411502IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-9411500No hitNo description
SuperFamilySSF1019364.71E-14411501IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0014413503IPR003340B3 DNA binding domain
PfamPF023629.5E-9423499IPR003340B3 DNA binding domain
PROSITE profilePS5086310.588427503IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-16589679IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-17589680IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.21591685IPR003340B3 DNA binding domain
CDDcd100173.76E-10592673No hitNo description
SMARTSM010197.1E-9594687IPR003340B3 DNA binding domain
PfamPF023624.7E-12603673IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MISLKSKAVM NIKGFGNVAY ELELQHELAA VHIVFHISML KKYMGDPSLI LLNKVTGIRY  60
SLSYEEIPVQ ILDRQVHKLR TKEVASVKVL WSSQFVEEDA WEGEEDMKTI YSQPFKSEEI  120
PDQVDEEEKD IPVNLQTNAN ELAEEESQDQ EVEEANHRSE EVGQKNNNRH SVVNLADDTP  180
YFEIVIKKTH TTYLTIPIRF AKRTNIVNMK NMRLVNEEGI RWGVEIEYTK RRAIIKRGWT  240
EFRKDNKIAT GETCRFKLIQ GRIANVLQNI KGFGNVAYEL ELPHELAAVH IVFHISMLKK  300
YMGDPSFILL NKVTGIRYSL SYEEIPVQIL DRQVHKLRTK EVASVKVLWS SQFVEEDAWE  360
GEEDMKKIFS QLFKCVEIPD QVGPTVLRSN YGPTWSMGFR NWILDPRIMG PCMVRILTHG  420
SYMDTRIPPV FAESHCKDML NHVFLQAPHG KAWEVEVEHS QGQIWLAKGW KEFSDFYAIS  480
VKQLLMFTYN ARDHFDVTIF GEEKDDIRLN LQTDANVIEE EEEYIPVNLQ TNANIIEEEE  540
KDIPVNLQTN ANELAEEESQ DQEVEEANHR SEEVGQKNNN RHSVVNLADD TPYFEIVIKK  600
THTTYLTIPI RFAKRTNIVN MKNMRLVNEE GIRWGVEIEY TKRRAIIKRG WTEFRKDNKI  660
ATGETCRFKL IQGRIANVLQ VQKIPTPHSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162984.11e-112PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A3Q7JMK11e-136A0A3Q7JMK1_SOLLC; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11726413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-10B3 family protein