PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g011510.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 303aa    MW: 33184.9 Da    PI: 6.802
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g011510.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1085e-341973155
           G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Sopen11g011510.1 19 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 73
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4851676IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-321874IPR009057Homeodomain-like
SuperFamilySSF466897.35E-181873IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-251974IPR006447Myb domain, plants
PfamPF002491.2E-92172IPR001005SANT/Myb domain
PfamPF143792.8E-23106152IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDPANEGNNP NNNPSLASKQ RLRWTHELHE RFVDAVAQLG GPDRATPKGV LRVMGVQGLT  60
IYHVKSHLQK YRLAKYLPDS SCDGKQSDKK ESGDMLSSLD GSSTGVQINE ALKLQMEVQK  120
RLHEQLEVQR QLQLRIEAQG KYLKKIIEEQ QRLSGVLAEV PDSGVTPSAA GDNGLDSDNR  180
TDPGTPAPTS VSPHIDTSVQ EHGRSKSLSI DQSFSSQHEP LTPDSGCRET SPINSSEGER  240
SSKKQRVGTF TKADMLLPHQ ILESSLSSRY EQPNPVFVAR EQFNLSSGLS LGNEGPNVRG  300
SNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0144620.0BT014462.1 Lycopersicon esculentum clone 133809F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059050.10.0myb family transcription factor PHL7-like isoform X3
RefseqXP_015059051.10.0myb family transcription factor PHL7-like isoform X3
RefseqXP_027768902.10.0myb family transcription factor PHL7-like isoform X3
RefseqXP_027768903.10.0myb family transcription factor PHL7-like isoform X3
SwissprotQ9SJW01e-119PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A3Q7IUE30.0A0A3Q7IUE3_SOLLC; Uncharacterized protein
STRINGSolyc11g022470.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27962451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.17e-94G2-like family protein