PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen11g010700.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 374aa MW: 39889.9 Da PI: 7.6554

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen11g010700.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.5	6.5e-40	82	196	3	115
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 ++k++++++h+kv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ ++s +ss+ + s++ Sopen11g010700.1 82 VAKKPSKDRHSKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNVSTRSSGTTISAPpsksap 174 5799****************************************************************9998777777777766666433444 PP TCP 89 ......kaaksaakskksqksaasalnlakesr 115 + + +a++l ++++ + Sopen11g010700.1 175 lfihgaS-----------ASASAAMLGFHHHLS 196 4554433...........444444555555333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.248	87	141	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.2E-37	87	201	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MEFMEPHRKK LGDASNHHQD NQEETPSSLQ LISPHQSQRD PSTPGSNHPH GPFMGSISMQ 60 SISPTSTNSS TPNNNTISTL KVAKKPSKDR HSKVDGRGRR IRMPALCAAR VFQLTRELGH 120 KSDGETIEWL LQQAEPAIIA TTGTGTIPAN FSTLNVSTRS SGTTISAPPS KSAPLFIHGA 180 SASASAAMLG FHHHLSTANT GFIQDPDENY MKKRFREDTT TSGATSPSAD KPGSDSSKPG 240 SSLIPGQAMW AVAPAGGNVG NGFWMLPVSG GTGSTTVSVG AGQSDHQLWQ YKSSRIGGLE 300 FPGGGRFSPV QLGSMVLQQS HPVQQLGSNM GMLNAYNNNN NSRVDLGMNL EHHHNQTQHQ 360 DSDSGDENHN DSQS

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MEFMEPHRKK LGDASNHHQD NQEETPSSLQ LISPHQSQRD PSTPGSNHPH GPFMGSISMQ  60
SISPTSTNSS TPNNNTISTL KVAKKPSKDR HSKVDGRGRR IRMPALCAAR VFQLTRELGH  120
KSDGETIEWL LQQAEPAIIA TTGTGTIPAN FSTLNVSTRS SGTTISAPPS KSAPLFIHGA  180
SASASAAMLG FHHHLSTANT GFIQDPDENY MKKRFREDTT TSGATSPSAD KPGSDSSKPG  240
SSLIPGQAMW AVAPAGGNVG NGFWMLPVSG GTGSTTVSVG AGQSDHQLWQ YKSSRIGGLE  300
FPGGGRFSPV QLGSMVLQQS HPVQQLGSNM GMLNAYNNNN NSRVDLGMNL EHHHNQTQHQ  360
DSDSGDENHN DSQS

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015056535.1	0.0	transcription factor TCP23-like
Swissprot	Q9C518	7e-66	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A3Q7JKS5	0.0	A0A3Q7JKS5_SOLLC; Uncharacterized protein
STRING	Solyc11g020670.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-44	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]