PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen11g005060.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HD-ZIP

Protein Properties

Length: 340aa MW: 38358.7 Da PI: 4.2282

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen11g005060.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	44	97	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Sopen11g005060.1 44 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 97 456899***********************************************9 PP
2	HD-ZIP_I/II	130	9.3e-42	43	135	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy++Lk+++d+l+++ e+L++++e+L +e++e Sopen11g005060.1 43 QKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYNVLKANFDSLEHNYESLKHDNEALVKEIRE 135 69**************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.88	39	99	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.17E-19	40	101	IPR009057	Homeodomain-like
SMART	SM00389	4.6E-18	42	103	IPR001356	Homeobox domain
CDD	cd00086	2.45E-17	43	100	No hit	No description
Pfam	PF00046	7.8E-16	44	97	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.2E-20	46	106	IPR009057	Homeodomain-like
PRINTS	PR00031	1.0E-5	70	79	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	74	97	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.0E-5	79	95	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.4E-16	99	139	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MSMCPSTTDD QNHGNSHVYS TRDFQSMLEL GLDEEGCVEE SGQKKRRLSV EQVKALEKNF 60 EVENKLEPER KVKLAQELGL QPRQVAVWFQ NRRARWKTKQ LERDYNVLKA NFDSLEHNYE 120 SLKHDNEALV KEIRELKFKV YGGENGESRG AVVVSVKEEA MESENDDKMI EQNNPNDLLE 180 EDDEDQDDDV EINATIASTI FADFNKDGSS DSDNSSAILN EDNSPNAAAI SSSGAFLISN 240 DGGVGCSSPN SLNFTFKFTE SSPKSILGDS QKANCFTYQP PSTTTTTTTT QYVKMEEHNF 300 FNGEESCSTL FSDEQAPTLQ WYCSEDWNFK DSKSSFLDHE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	99	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015058295.1	0.0	homeobox-leucine zipper protein ATHB-6
TrEMBL	A0A3Q7JIT6	0.0	A0A3Q7JIT6_SOLLC; Uncharacterized protein
STRING	Solyc11g010270.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2718	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	6e-56	homeobox protein 16