PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g033790.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 462aa    MW: 51001.2 Da    PI: 6.5933
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g033790.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.2e-17134183155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sopen10g033790.1 134 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 183
                       78*******************......55************************998 PP
2AP241.14.4e-13226276155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+       g    +k+++lg f+ + eAa+a+++a+ k +g
  Sopen10g033790.1 226 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDNEIEAARAYDKAAIKCNG 276
                       89********.7******...5...334336**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-9134183IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-16134193IPR016177DNA-binding domain
CDDcd000186.20E-12135193No hitNo description
Gene3DG3DSA:3.30.730.104.5E-17135191IPR001471AP2/ERF domain
PROSITE profilePS5103217.82135191IPR001471AP2/ERF domain
SMARTSM003805.9E-32135197IPR001471AP2/ERF domain
PfamPF008472.4E-8226276IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-16226285IPR016177DNA-binding domain
CDDcd000183.42E-25226284No hitNo description
Gene3DG3DSA:3.30.730.101.3E-15227284IPR001471AP2/ERF domain
PROSITE profilePS5103215.277227284IPR001471AP2/ERF domain
SMARTSM003804.5E-31227290IPR001471AP2/ERF domain
PRINTSPR003677.3E-6228239IPR001471AP2/ERF domain
PRINTSPR003677.3E-6266286IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MFDLNLSFDD VSVEPISVLA SEKVDEMLFN QMENSGTSNS SIVNMETSST AADDEYFSPD  60
HHRDGYAFDI LKSDREAGDR GGFVVKELFP LVNGEVGLDL SANYGDLNEQ RIGKTPQQIL  120
QAKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK  180
FRGLDADINF NISDYEEDLK QMKNFSKEEF VHILRRQSNG FSRGSSKYRG VTLHKCGRWE  240
ARMGQLLGKK YIYLGLFDNE IEAARAYDKA AIKCNGREAV TNFEPNTYEG ALSSEADTGG  300
TDHNIDLNLG ISLSSYAENQ HGNTSQIGNF QCQHGSNGLP EHHGEVRTPA STTLKSKLLL  360
HGEHTLTQNP LHWNGSNGKG SAIEKGLEVD TSLKWMGHDQ NTYDGSPTLP LFSTAASSGF  420
GNSANTAPSA AIHQLHSGSG ALPFPHSPSL TNMNLSHHYC RS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089448.10.0AP2-like ethylene-responsive transcription factor TOE3
SwissprotB8AXC31e-101AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A3Q7IMC90.0A0A3Q7IMC9_SOLLC; Uncharacterized protein
STRINGSolyc10g084340.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-105related to AP2.7