PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen10g033660.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 770aa MW: 88481.1 Da PI: 8.3627

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen10g033660.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.6	2.8e-20	50	125	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YA+++GF++r+ + ++s+ +g++++r+fvCskeg++++ +rtgC a ++v++ ++gkw+++++++eHnH+l Sopen10g033660.1 50 EFYNLYATKIGFRIRIGQLYRSRIDGSVVSRRFVCSKEGFQTT--------------SRTGCPAFIRVQRLDSGKWVLANIKKEHNHDLE 125 6*************************************976..............589*************************996 PP
2	FAR1	64.7	2.5e-20	205	279	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+++A ++GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w v+++++eHnHel Sopen10g033660.1 205 EFYHTHAANTGFKVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQESGRWLVDRFQNEHNHEL 279 6************************************9998..............4899*************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-16	50	125	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	5.6E-16	205	279	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.9E-27	379	470	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.534	656	692	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.1E-8	662	689	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.1E-8	667	694	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence Send to blast
MTVRAKPVGG LAIATIVKNN VHHRDVDEEG ESRLEPNVGL EFDSAEDAQE FYNLYATKIG 60 FRIRIGQLYR SRIDGSVVSR RFVCSKEGFQ TTSRTGCPAF IRVQRLDSGK WVLANIKKEH 120 NHDLEHPGEI CPSRIQRKIV TPTPTPKSKS ASIVVSTRTG LRSLDEDGPS GILDFKRLKR 180 EKINGETRSE PYKGLEFVSA AEAYEFYHTH AANTGFKVRI GQLFRSKNDG SITSRRFVCS 240 KEGHQHPSRV GCGAFMRIQR QESGRWLVDR FQNEHNHELG APIDASERVS SKGFKEELSH 300 GLENMDLVES NGGFSLVTRS RESKIGSDWY NELFDYFQAR QADDMGFFYA VEMHKGRAMS 360 VLWADSRSRF SCTQFGDAIV FDTTYRRGSY SVPLASFIGV NHHRQPVLLG CALIAEESEE 420 SFTWLFQAWL RAMSGRRPIS IVADQDWVIQ HSIAQVFPGT HHRFSAWQVV AKEQENIGAL 480 LSMNPEFKYE YETCIFQSQT ANEFEAAWNV LINKYNLREN TWLKDMYRMR KSWVPLYIKG 540 TFFAGIPTDG SLKSYFGTLL TSQAPLSEFL IRYEKSLEQR REEERKEDFN SFNLQAVLHT 600 KDPIEDQCRR LYTISMFKVF QKELLECYSY VGIKINVEGA ISRYLVQKCE NGDERHTVAF 660 NASNLNISCS CKMFEFEGVL CRHALKVFQI MNIRELPSRY ILHRWTKDAK YGILRDVDSG 720 GASQDHKALM SWSLREEAKN YIEAGTASLE RYKLAFEIMQ EGRRNLCWQN

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence Send to blast

MTVRAKPVGG LAIATIVKNN VHHRDVDEEG ESRLEPNVGL EFDSAEDAQE FYNLYATKIG  60
FRIRIGQLYR SRIDGSVVSR RFVCSKEGFQ TTSRTGCPAF IRVQRLDSGK WVLANIKKEH  120
NHDLEHPGEI CPSRIQRKIV TPTPTPKSKS ASIVVSTRTG LRSLDEDGPS GILDFKRLKR  180
EKINGETRSE PYKGLEFVSA AEAYEFYHTH AANTGFKVRI GQLFRSKNDG SITSRRFVCS  240
KEGHQHPSRV GCGAFMRIQR QESGRWLVDR FQNEHNHELG APIDASERVS SKGFKEELSH  300
GLENMDLVES NGGFSLVTRS RESKIGSDWY NELFDYFQAR QADDMGFFYA VEMHKGRAMS  360
VLWADSRSRF SCTQFGDAIV FDTTYRRGSY SVPLASFIGV NHHRQPVLLG CALIAEESEE  420
SFTWLFQAWL RAMSGRRPIS IVADQDWVIQ HSIAQVFPGT HHRFSAWQVV AKEQENIGAL  480
LSMNPEFKYE YETCIFQSQT ANEFEAAWNV LINKYNLREN TWLKDMYRMR KSWVPLYIKG  540
TFFAGIPTDG SLKSYFGTLL TSQAPLSEFL IRYEKSLEQR REEERKEDFN SFNLQAVLHT  600
KDPIEDQCRR LYTISMFKVF QKELLECYSY VGIKINVEGA ISRYLVQKCE NGDERHTVAF  660
NASNLNISCS CKMFEFEGVL CRHALKVFQI MNIRELPSRY ILHRWTKDAK YGILRDVDSG  720
GASQDHKALM SWSLREEAKN YIEAGTASLE RYKLAFEIMQ EGRRNLCWQN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015056325.1	0.0	protein FAR1-RELATED SEQUENCE 12-like
Refseq	XP_015056326.1	0.0	protein FAR1-RELATED SEQUENCE 12-like
Refseq	XP_015056328.1	0.0	protein FAR1-RELATED SEQUENCE 12-like
Refseq	XP_027768235.1	0.0	protein FAR1-RELATED SEQUENCE 12-like
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A3Q7JGE1	0.0	A0A3Q7JGE1_SOLLC; Uncharacterized protein
STRING	Solyc10g084220.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]