PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g007160.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 357aa    MW: 40109.8 Da    PI: 8.7517
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g007160.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.57.1e-131657243
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                      +ien+s r +tfskRr g+ KKA EL   Cd++  +++ s++
  Sopen10g007160.1 16 KIENESARLTTFSKRRSGLYKKACELVRECDVDLGIVMSSPK 57
                      79************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-11766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.829757IPR002100Transcription factor, MADS-box
CDDcd001201.56E-16857No hitNo description
SuperFamilySSF554552.22E-15857IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-8929IPR002100Transcription factor, MADS-box
PfamPF003191.1E-151657IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEHKKTAGRQ KISLAKIENE SARLTTFSKR RSGLYKKACE LVRECDVDLG IVMSSPKAPA  60
DLRSTCIIAL KNQFSCSQSR QASKLLVRIL GSNTEEQWMR SVNLAITNWI LEINSSSNHH  120
HHAMKTPCPL FSYSFSTQGL WKVQLYCPVI AMEVETSTCS SLSDESLRFS LNFHQLEGVI  180
QLNHRVIIRE KWIEVMVNTD NIRCDVVRLV NESLMAERGA GVSEKHFPSR ISLQITPTLQ  240
SNVLSISVNK SSDNPLREIG IEKTVEAGFD SPNTYMGLKV SAGETVVTTM KPWKFEQSVN  300
GDGANLNWFL HDSGNGRERG IAPRSLQGRR FHLDPPHMPP SVGRFEHQKG IFVSVEE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089524.10.0uncharacterized protein LOC107032436
RefseqXP_015089525.10.0uncharacterized protein LOC107032437
TrEMBLA0A3Q7J8A50.0A0A3Q7J8A5_SOLLC; Uncharacterized protein
STRINGSolyc10g018120.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.13e-12AGAMOUS-like 57