PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g005370.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 290aa    MW: 33696.9 Da    PI: 5.252
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g005370.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.55e-2799159259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK++ g+ +pr+YYrCt++   gC ++k+v++s++dp v+++tY+g H ++
  Sopen10g005370.1  99 EDGYSWRKYGQKNILGAIHPRAYYRCTHRntqGCLATKQVQKSEQDPLVFDVTYKGMHSCK 159
                       8***************************98889*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-2690160IPR003657WRKY domain
SuperFamilySSF1182901.11E-2494160IPR003657WRKY domain
SMARTSM007741.5E-3898160IPR003657WRKY domain
PfamPF031062.1E-2599159IPR003657WRKY domain
PROSITE profilePS5081122.19499161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEKVKVWNKE SLITELTQGK EFVNQFDPLA SPEENDFLLE KILSSLDKSL SILNCIVYNG  60
TNDPFPLRDQ GQNKKRKKMQ QWSKQVRVYG TELESFNHED GYSWRKYGQK NILGAIHPRA  120
YYRCTHRNTQ GCLATKQVQK SEQDPLVFDV TYKGMHSCKT SQSSIFISYE NQKPNQCQIK  180
KQRVENLNTI KEETVPFTPL QCESHNAQFF VNSIEPFASE SMYLSLLPNQ EEEFEMDKIL  240
KSSESDRIVF SSTPTSIIDS PFSRDWDLSV NDQLDVHDPN LMIDISEYFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-1797159769OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17377KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056390.10.0probable WRKY transcription factor 30
TrEMBLA0A3Q7ICZ90.0A0A3Q7ICZ9_SOLLC; Uncharacterized protein
STRINGSolyc10g009550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-31WRKY family protein