PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g005070.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 455aa    MW: 50735.1 Da    PI: 6.5114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g005070.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-13270315454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h e+Er+RR+++N++f  Lr+++P+      +K++Ka+ L  Av YI++L
  Sopen10g005070.1 270 NHVEAERQRREKLNHRFYALRSVVPHV-----TKMDKASLLSDAVSYINEL 315
                       799***********************8.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-5428203IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.231266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-18267330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.43E-14269319No hitNo description
Gene3DG3DSA:4.10.280.104.8E-17270329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-11270315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-16272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00694401454No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDELIVSSSS SSSSFFIPSL VSQTSSNLQQ KLQNILKIQT DSWSYAIFWQ TTNDDDDGHL  60
FLAWGDGHFH GTKSKTGVQS SQQSTERKNV IKGIQALICE NGDEKVDDDD EVTDAEWFYV  120
MSLAQSFSIG DGVPGKAFST GSIIWLTGSQ NLQFHTCKRA KEAHVHGIQT FVCIPTSNGV  180
IEMGSNQLIK ENWVLIQQVK SIFTNSIPHI DIVNCLQQNT NINPKTEELV SVSVSAECND  240
SDSDCQVLVE KKTPKKRGRK PGATRETPLN HVEAERQRRE KLNHRFYALR SVVPHVTKMD  300
KASLLSDAVS YINELKSKVT ELETQLTRKS KKLKIECTDS FTIDNNSTAT TTNSVDQIRH  360
NSSSAASFGV QNNLKFEVEV KILGPDAMVR VQSENVNYPS ARLMRALQDL ELHVHHASIS  420
SVNDIMLQDI VVKVPIGLST EDRLKNALIR SIEQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-39282039192Transcription factor MYC3
4rqw_B8e-39282039192Transcription factor MYC3
4rs9_A8e-39282039192Transcription factor MYC3
4yz6_A8e-39282039192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089574.10.0transcription factor MYC2-like
TrEMBLA0A3Q7IBQ90.0A0A3Q7IBQ9_SOLLC; Uncharacterized protein
STRINGSolyc10g009290.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.18e-78bHLH family protein