PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen09g032470.2

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ZF-HD

Protein Properties

Length: 822aa MW: 92205.5 Da PI: 7.7855

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen09g032470.2	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.7	5.1e-32	571	625	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rY+eClkNhAas+Ggha+DGCgEfmps geegt+ alkCaAC+CH nFHR+e + Sopen09g032470.2 571 SIRYRECLKNHAASMGGHALDGCGEFMPS-GEEGTPGALKCAACNCHQNFHRKEID 625 789***********************9.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14111	3.0E-8	43	125	IPR025558	Domain of unknown function DUF4283
Pfam	PF14111	1.8E-10	325	409	IPR025558	Domain of unknown function DUF4283
Pfam	PF04770	7.1E-30	572	624	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.2E-30	573	624	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-23	573	626	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.735	574	623	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 822 aa Download sequence Send to blast
MAAPQRDFNI ENQEEEPKSK IVYLNYRRMP AVIFRKKYWD WNSMVAVCKL TMVGKFFIPK 60 PKMTKIRASF QAKLSLKGVA KIRSYDSYHV FIDFTAEEDY QSVLLKERVV VAGAIMEVFQ 120 WTPEFHDQFF VLKLSVDSFC LSSKKREAFG VVELDNTKKD EHIGGGNEYG TEESDSVACV 180 PEVTHSDSED RVASPIKCET SKLPSSVGIS CSGFSGLSSA PYRITGRIPS VTYESSSMCS 240 TELVPFRGTY LNHNNLKSYS REWNYGSKPT SEAADLACEA LSQPLYALSI VERHENQKSR 300 PPIEVQHSTY MGYPTLTFPR RYGESLVSDY KLTLLGNFSY KRPKMKEIRA DFKAQNPLSG 360 QVKIRNCSSR QVLILFTNEE DYYTVLYKKA IIVAGVLMQI SWSSPDFHHE VKQNIHPDFR 420 LSDAKSVNWN TDTSKLHPSI NGLLAPATDE KSMSLQVPAM SQCLSVPSIR PPLPLLAHSE 480 SVAGRLCADR LTTSGIYVPQ SCPKGIVGSP IFGSNEQAGR GNTFPRPSQA LNQQSLAQQH 540 NQLNSYKPNM TVRIAQLQPP STTSVSDITS SIRYRECLKN HAASMGGHAL DGCGEFMPSG 600 EEGTPGALKC AACNCHQNFH RKEIDGYQPM DDVGSHSRFS QPRNNSSSGS IQNQVPISLP 660 TQQYHRDYSD SCSPRSLVDS LQPYTQPPSP TSGSVYSQQA LERIEPSSIR PSYSYEMVNH 720 NAVQNGKQRE YFWSDSSRNT SRDHPSVRNE NWNFDMDKPL NNRTPDHIPL EFPAYPSRCQ 780 PQTVFTDEFP HLDIINNLLH EEHGTGRTLM SNSGSQRLNN GS

Sequence ? help Back to Top

Protein Sequence Length: 822 aa Download sequence Send to blast

MAAPQRDFNI ENQEEEPKSK IVYLNYRRMP AVIFRKKYWD WNSMVAVCKL TMVGKFFIPK  60
PKMTKIRASF QAKLSLKGVA KIRSYDSYHV FIDFTAEEDY QSVLLKERVV VAGAIMEVFQ  120
WTPEFHDQFF VLKLSVDSFC LSSKKREAFG VVELDNTKKD EHIGGGNEYG TEESDSVACV  180
PEVTHSDSED RVASPIKCET SKLPSSVGIS CSGFSGLSSA PYRITGRIPS VTYESSSMCS  240
TELVPFRGTY LNHNNLKSYS REWNYGSKPT SEAADLACEA LSQPLYALSI VERHENQKSR  300
PPIEVQHSTY MGYPTLTFPR RYGESLVSDY KLTLLGNFSY KRPKMKEIRA DFKAQNPLSG  360
QVKIRNCSSR QVLILFTNEE DYYTVLYKKA IIVAGVLMQI SWSSPDFHHE VKQNIHPDFR  420
LSDAKSVNWN TDTSKLHPSI NGLLAPATDE KSMSLQVPAM SQCLSVPSIR PPLPLLAHSE  480
SVAGRLCADR LTTSGIYVPQ SCPKGIVGSP IFGSNEQAGR GNTFPRPSQA LNQQSLAQQH  540
NQLNSYKPNM TVRIAQLQPP STTSVSDITS SIRYRECLKN HAASMGGHAL DGCGEFMPSG  600
EEGTPGALKC AACNCHQNFH RKEIDGYQPM DDVGSHSRFS QPRNNSSSGS IQNQVPISLP  660
TQQYHRDYSD SCSPRSLVDS LQPYTQPPSP TSGSVYSQQA LERIEPSSIR PSYSYEMVNH  720
NAVQNGKQRE YFWSDSSRNT SRDHPSVRNE NWNFDMDKPL NNRTPDHIPL EFPAYPSRCQ  780
PQTVFTDEFP HLDIINNLLH EEHGTGRTLM SNSGSQRLNN GS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015086490.1	0.0	uncharacterized protein LOC107029567 isoform X2
TrEMBL	A0A3Q7I763	0.0	A0A3Q7I763_SOLLC; Uncharacterized protein
STRING	Solyc09g089550.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14101	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	7e-26	homeobox protein 33