PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen09g032470.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ZF-HD

Protein Properties

Length: 806aa MW: 90422.4 Da PI: 7.5689

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen09g032470.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.7	5e-32	555	609	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rY+eClkNhAas+Ggha+DGCgEfmps geegt+ alkCaAC+CH nFHR+e + Sopen09g032470.1 555 SIRYRECLKNHAASMGGHALDGCGEFMPS-GEEGTPGALKCAACNCHQNFHRKEID 609 789***********************9.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14111	3.0E-8	43	125	IPR025558	Domain of unknown function DUF4283
Pfam	PF14111	1.7E-10	309	393	IPR025558	Domain of unknown function DUF4283
Pfam	PF04770	7.0E-30	556	608	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	6.0E-23	557	610	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.0E-30	557	608	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.735	558	607	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 806 aa Download sequence Send to blast
MAAPQRDFNI ENQEEEPKSK IVYLNYRRMP AVIFRKKYWD WNSMVAVCKL TMVGKFFIPK 60 PKMTKIRASF QAKLSLKGVA KIRSYDSYHV FIDFTAEEDY QSVLLKERVV VAGAIMEVFQ 120 WTPEFHDQFR EAFGVVELDN TKKDEHIGGG NEYGTEESDS VACVPEVTHS DSEDRVASPI 180 KCETSKLPSS VGISCSGFSG LSSAPYRITG RIPSVTYESS SMCSTELVPF RGTYLNHNNL 240 KSYSREWNYG SKPTSEAADL ACEALSQPLY ALSIVERHEN QKSRPPIEVQ HSTYMGYPTL 300 TFPRRYGESL VSDYKLTLLG NFSYKRPKMK EIRADFKAQN PLSGQVKIRN CSSRQVLILF 360 TNEEDYYTVL YKKAIIVAGV LMQISWSSPD FHHEVKQNIH PDFRLSDAKS VNWNTDTSKL 420 HPSINGLLAP ATDEKSMSLQ VPAMSQCLSV PSIRPPLPLL AHSESVAGRL CADRLTTSGI 480 YVPQSCPKGI VGSPIFGSNE QAGRGNTFPR PSQALNQQSL AQQHNQLNSY KPNMTVRIAQ 540 LQPPSTTSVS DITSSIRYRE CLKNHAASMG GHALDGCGEF MPSGEEGTPG ALKCAACNCH 600 QNFHRKEIDG YQPMDDVGSH SRFSQPRNNS SSGSIQNQVP ISLPTQQYHR DYSDSCSPRS 660 LVDSLQPYTQ PPSPTSGSVY SQQALERIEP SSIRPSYSYE MVNHNAVQNG KQREYFWSDS 720 SRNTSRDHPS VRNENWNFDM DKPLNNRTPD HIPLEFPAYP SRCQPQTVFT DEFPHLDIIN 780 NLLHEEHGTG RTLMSNSGSQ RLNNGS

Sequence ? help Back to Top

Protein Sequence Length: 806 aa Download sequence Send to blast

MAAPQRDFNI ENQEEEPKSK IVYLNYRRMP AVIFRKKYWD WNSMVAVCKL TMVGKFFIPK  60
PKMTKIRASF QAKLSLKGVA KIRSYDSYHV FIDFTAEEDY QSVLLKERVV VAGAIMEVFQ  120
WTPEFHDQFR EAFGVVELDN TKKDEHIGGG NEYGTEESDS VACVPEVTHS DSEDRVASPI  180
KCETSKLPSS VGISCSGFSG LSSAPYRITG RIPSVTYESS SMCSTELVPF RGTYLNHNNL  240
KSYSREWNYG SKPTSEAADL ACEALSQPLY ALSIVERHEN QKSRPPIEVQ HSTYMGYPTL  300
TFPRRYGESL VSDYKLTLLG NFSYKRPKMK EIRADFKAQN PLSGQVKIRN CSSRQVLILF  360
TNEEDYYTVL YKKAIIVAGV LMQISWSSPD FHHEVKQNIH PDFRLSDAKS VNWNTDTSKL  420
HPSINGLLAP ATDEKSMSLQ VPAMSQCLSV PSIRPPLPLL AHSESVAGRL CADRLTTSGI  480
YVPQSCPKGI VGSPIFGSNE QAGRGNTFPR PSQALNQQSL AQQHNQLNSY KPNMTVRIAQ  540
LQPPSTTSVS DITSSIRYRE CLKNHAASMG GHALDGCGEF MPSGEEGTPG ALKCAACNCH  600
QNFHRKEIDG YQPMDDVGSH SRFSQPRNNS SSGSIQNQVP ISLPTQQYHR DYSDSCSPRS  660
LVDSLQPYTQ PPSPTSGSVY SQQALERIEP SSIRPSYSYE MVNHNAVQNG KQREYFWSDS  720
SRNTSRDHPS VRNENWNFDM DKPLNNRTPD HIPLEFPAYP SRCQPQTVFT DEFPHLDIIN  780
NLLHEEHGTG RTLMSNSGSQ RLNNGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015086489.1	0.0	uncharacterized protein LOC107029567 isoform X1
TrEMBL	A0A3Q7I763	0.0	A0A3Q7I763_SOLLC; Uncharacterized protein
STRING	Solyc09g089550.2.1	0.0	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	6e-26	homeobox protein 33