PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g030440.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 757aa    MW: 86609.8 Da    PI: 7.0089
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g030440.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.28.7e-2159152190
              FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 
                       +fY+++Ak++GFs+r+++++ +    + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+      +w++t +++ HnHel
  Sopen09g030440.1  59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPSDDGKLQRNRKSSRCGCQAFMRIVKRAdhnVPEWRITGFSNVHNHEL 151
                       6***************999887455667********************9*******************99888555568*************9 PP

              FAR1  90 a 90 
                        
  Sopen09g030440.1 152 L 152
                       6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-1859152IPR004330FAR1 DNA binding domain
PfamPF105512.0E-21275366IPR018289MULE transposase domain
PROSITE profilePS5096610.225551587IPR007527Zinc finger, SWIM-type
PfamPF044344.3E-8559585IPR007527Zinc finger, SWIM-type
SMARTSM005756.5E-6562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MPEITNIAKE TSENGTDSSQ DNTGTVEEMP EDTILQQQTS VNLIPFIGQK FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSDDGKL QRNRKSSRCG  120
CQAFMRIVKR ADHNVPEWRI TGFSNVHNHE LLKSTVMQLI PAYCTMSPDD KSRICMFVKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEVDVR NFLQSFRNVD QDNDPIDLIK MCKEMKDKDL  240
KFKYDYKIDC NNRLEHIAWS YASSMRLYED FGDAIVFDTT HRLDVYDMLL GIWIGVDNHG  300
SHCFFGCILL RDENMRSFSW ALKTFLGFMN GKTPGTILTD QNLWLKEAIA TQMPRVKHAF  360
CIWNITSRFS EWFSTLLGSQ YDNWKAEFHR LYNLHSIEEY EVGWNEMIET YRLDGNKHIA  420
SLYALRSYWA LPFLRSFFFA GMTSTFQSET INTFIQRFLS AQSVLGNFVE QVVRVVDAKD  480
QAGAKHKVQR IVQKVPLKTG SPIESHAANV LTTYAFSKLQ EELVFAPQYA SLMVDESYFV  540
VRHHKEMGGG YKVLWVPHDE FISCSCHNFE FTGILCRHVL RVLSTNNCFH IPDRYLPMRW  600
REFTSSLAKP TLLSLPSDHL GKVQLLQSMI STLINESVET EERLNVVCDE VSTVLSRMKG  660
LPTAANSGNA IAYESPSDSL ILAEVEDSEG IGQSFTCSPH ECINLAKLKE RGSRDGLDFY  720
GKRRRFSIPC CGQYGHDAND CPMMEGEDLN GDRLGFL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088413.10.0protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_015088414.10.0protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_027775510.10.0protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_027775511.10.0protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A3Q7I7710.0A0A3Q7I771_SOLLC; Uncharacterized protein
STRINGSolyc09g075640.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135351416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]