PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g022740.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 319aa    MW: 35647.6 Da    PI: 4.4014
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g022740.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3413.4e-1320101991
                       HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                B3   9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                       d+ +++ + +p+kf+++h   + + +s+ l +ed   + + +++ ++++++ y++++GW+ F ++++L++gD + F+   +++ +
  Sopen09g022740.1  20 DNYSLSSVLIPNKFVQQHlpPIASGKSMILEFEDCGENNFMMEVVHSNYGDYYYIRTGWETFKNQHKLESGDLIYFS---KKNDS 101
                       66777889**********99666678999*****999999999988******************************9...23333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.61E-1215101IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-1019103IPR003340B3 DNA binding domain
CDDcd100171.46E-1020101No hitNo description
Gene3DG3DSA:2.40.330.103.1E-1122101IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEDQDVDENG SNNSEVVVID NYSLSSVLIP NKFVQQHLPP IASGKSMILE FEDCGENNFM  60
MEVVHSNYGD YYYIRTGWET FKNQHKLESG DLIYFSKKND SYVIYSCKTD LQVSNESIER  120
VQVLVKNFCA KDPKCLRLLK KEVEGNLDQH LIIQVGEEVI LPLHDPIRKK SFIVQLLHAD  180
QEEYHIRGIG WEEYVAQHNL FIFDETTIFV NKVILDPTAE VQLVNISYHY EITYQTTATN  240
QPQRKLKLSG TTTETSSAPA STAVDNSSAP PSTTVDNSSA PASTTVDNSS APASTVVDNS  300
SAPASTAVDN SCDDVYWLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767734.10.0uncharacterized protein LOC114074008
TrEMBLM1DES81e-173M1DES8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000878961e-173(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1705534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.13e-08ethylene response DNA binding factor 3