PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen09g022670.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 29087.8 Da PI: 9.1433 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.6 | 4.9e-11 | 107 | 145 | 3 | 48 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 +GV++ k+ +W A I++ +k+++lg+ gt eeAa+++++ Sopen09g022670.2 107 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDR 145 79**98..47*********4.....5******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.4E-5 | 106 | 145 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-7 | 107 | 147 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-4 | 109 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MVSIRRRKLL GLCSGRSTFL VPLPKFSENG HFAEHRFFSN RPTSVHPMPS TDIDESKEKI 60 AVKVIPGSSN SHASGSLMEQ TAQQFPEVKR RKRHRRKHFE NQEPCLMRGV YFKNMKWQAA 120 IKVDKKQIHL GTVGTQEEAA RLYDRLVPYW YLIRWGFLGA AFMCGREPNF ELSEEEKQEL 180 RQFKWDDFLA FTRSAITNKK TRRRSGAGAR RKSEPSTSAL NSEEDEEEEE GGEPESNSFS 240 ASEDIEHDIL FS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254066 | 2e-96 | AC254066.8 Solanum lycopersicum strain Heinz 1706 chromosome 9 clone sle-10p22 map 9, complete sequence. | |||
GenBank | HG975448 | 2e-96 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 2e-96 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027767565.1 | 1e-148 | ethylene-responsive transcription factor-like protein At4g13040 isoform X2 | ||||
TrEMBL | A0A3Q7I2K0 | 1e-138 | A0A3Q7I2K0_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400045091 | 1e-136 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6246 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 4e-42 | ERF family protein |