PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g022530.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 300aa    MW: 33970 Da    PI: 4.6642
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g022530.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.5e-1220103993
                       HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       d+ +++ + +p+kf+++h   + + +s+ l +ed   + + +++ ++++++ y +++GW+ F ++++L++gD + F+   +++ ++v
  Sopen09g022530.1  20 DNYSLSSVLIPNKFVQQHlpPIASGKSMILEFEDCGENNFMMEVVHSNYGDYYHIRTGWETFKNQHKLESGDLIYFS---KKNDSYV 103
                       66777889**********99666678999*****999999999988******************************9...3333345 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-1115101IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-919103IPR003340B3 DNA binding domain
CDDcd100173.04E-920101No hitNo description
Gene3DG3DSA:2.40.330.102.2E-1022102IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEDQDVDENG SNNSEVVVID NYSLSSVLIP NKFVQQHLPP IASGKSMILE FEDCGENNFM  60
MEVVHSNYGD YYHIRTGWET FKNQHKLESG DLIYFSKKND SYVIYSCKTP KTDLQVSNES  120
IERVHVLVKN FCAKDPKCLR LLKKEVEGNL DQHLIIQVGE EVILPLHDPI RKKSFIVQLL  180
HADQEEYHIR GIGWEEYVAQ HNLFIFDETT IFVNKVILDP TAEVQLVNIS YHYEITYQTE  240
AKNQPQRKLK LSGTTTETSS APASTAVDNS SAPASTTVDN SSAPASTAVD NSFDDVYWLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767827.10.0uncharacterized protein LOC114074096
TrEMBLM1DES81e-173M1DES8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000878961e-174(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1705534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.13e-07ethylene response DNA binding factor 3