PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g009930.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 291aa    MW: 33280.7 Da    PI: 5.4156
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g009930.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.51.3e-23109170159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +dDg++WrKYGqK++ +s++pr+Y+rCt++   +C++ k+v++ +++p+ + +tY g+H+++
  Sopen09g009930.1 109 VDDGHAWRKYGQKQILNSTYPRHYFRCTHKydqKCQASKQVQKIQDNPQRFRTTYYGHHTCK 170
                       59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-2496170IPR003657WRKY domain
PROSITE profilePS5081120.002104172IPR003657WRKY domain
SuperFamilySSF1182901.03E-23106170IPR003657WRKY domain
SMARTSM007741.1E-33109171IPR003657WRKY domain
PfamPF031062.9E-22110170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDNSSTDLNR AIEGLIRGRE LTRRLKEIIK KSGGEVENIM AEDLVAKILD SFSETLSVIN  60
NSDVVVATAV EVKSPEDYSS GSCKSSDRRG CYKRRKTSES DIKESSDLVD DGHAWRKYGQ  120
KQILNSTYPR HYFRCTHKYD QKCQASKQVQ KIQDNPQRFR TTYYGHHTCK AFPRVSQIIL  180
DSPMDGNSNY ISFDQNHTFP SIKQETKEEA VFRFYPKIED QIQSSSSDYF LPNDHDHDHL  240
TPATFEASGS RMTSPDVMSS GVYSSCTTTS NNDNLEIDID FEEDLWNFDQ V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-23109170869OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ7060950.0HQ706095.1 Solanum lycopersicum WRKY3 (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086412.10.0WRKY DNA-binding transcription factor 70-like
SwissprotK4BIZ94e-45WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBLI3NN770.0I3NN77_SOLLC; WRKY3
STRINGSolyc09g015770.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-40WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]