PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen09g005880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 276aa MW: 31707.3 Da PI: 8.1678 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 52 | 74 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Sopen09g005880.1 52 YTCSFCRREFRSAQALGGHMNVH 74 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.09E-6 | 49 | 79 | No hit | No description |
SMART | SM00355 | 0.0061 | 52 | 74 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.219 | 52 | 79 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 54 | 74 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MEQTRYWMST KRKHDMTLSN NPSSYGDSWE EQAFAEDAAG ALGGCIWPPR SYTCSFCRRE 60 FRSAQALGGH MNVHRRDRAR MKQSPPSNSP SVHDHQVFIP PTPPLHSNHH HNSHVQYPSQ 120 ICNTFMYNPN SDSASGVPIR VSSQKTLETH HHSSLSSIVQ EEKKNNLSSS WSNLVADKYS 180 CLSSVKNDEE KKMKSIDFKK DQERNLEVMI DSSFRAKRDH IVETNYKRRK VDQEDNISFA 240 NLFPRTSSSI ERCRPQSEAL ERIPSAIEEL DLELKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 47 | 74 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 47 | 74 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015087499.1 | 0.0 | zinc finger protein 10-like | ||||
Swissprot | O80942 | 3e-26 | ZFP10_ARATH; Zinc finger protein 10 | ||||
TrEMBL | A0A3Q7I017 | 0.0 | A0A3Q7I017_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g011120.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9045 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 2e-27 | zinc-finger protein 10 |