PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g005550.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 536aa    MW: 59439.4 Da    PI: 8.0888
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g005550.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-1659104147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +g WT+eEd+ l++av  + g++Wk+Ia+ ++  R++ qc +rwqk+
  Sopen09g005550.1  59 KGGWTPEEDDTLKQAVSVYRGKCWKKIAEFFP-DRSEVQCLHRWQKV 104
                       688*****************************.************96 PP
2Myb_DNA-binding53.26.7e-17111157148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT eEd++++++v+++G+  W+ Ia+ +  gR +kqc++rw+++l
  Sopen09g005550.1 111 KGPWTREEDDKIIELVAKYGPIKWSVIAKSLT-GRIGKQCRERWHNHL 157
                       79******************99*********9.*************97 PP
3Myb_DNA-binding54.42.9e-17163206146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++WT eE+  l+da++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Sopen09g005550.1 163 KDAWTLEEERALIDAHRIHGNK-WAEIAKVLP-GRTDNGIKNHWNS 206
                       679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.53854105IPR017930Myb domain
SuperFamilySSF466891.08E-1455112IPR009057Homeodomain-like
SMARTSM007171.1E-1458107IPR001005SANT/Myb domain
PfamPF002493.4E-1559104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2161117IPR009057Homeodomain-like
CDDcd001671.47E-1262105No hitNo description
PROSITE profilePS5129430.523106161IPR017930Myb domain
SuperFamilySSF466891.61E-30108204IPR009057Homeodomain-like
SMARTSM007173.0E-17110159IPR001005SANT/Myb domain
CDDcd001678.32E-15113157No hitNo description
PfamPF139212.3E-17114174No hitNo description
Gene3DG3DSA:1.10.10.601.4E-26118164IPR009057Homeodomain-like
SMARTSM007172.5E-16162210IPR001005SANT/Myb domain
PROSITE profilePS5129422.531162212IPR017930Myb domain
CDDcd001672.67E-12165208No hitNo description
Gene3DG3DSA:1.10.10.602.9E-23165212IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MDEMKVEECC TENKQSAAAS SSSVSENSGS VTLRSPAVSS PTPASPTHRR TTGPIRRAKG  60
GWTPEEDDTL KQAVSVYRGK CWKKIAEFFP DRSEVQCLHR WQKVINPELV KGPWTREEDD  120
KIIELVAKYG PIKWSVIAKS LTGRIGKQCR ERWHNHLNPN IKKDAWTLEE ERALIDAHRI  180
HGNKWAEIAK VLPGRTDNGI KNHWNSSLKK KLDFYVATGN LPPATGTAKA EELPVWSNKT  240
SEGAEVASSG TTDTCKIENR WQVAEISASN GGPQTESTDS EVVRLESQSP EEDAIQHIKP  300
STQSENRYEG WNMDSAVGRL QVFEAPFPCE IPTCGMLCYE PPRSESCIPL DSDLLNICRA  360
QCESDASPSP SPDGFFTPPS TKGRSLCAQT PESVLRIAAR SFPNTPSILR KRKTQGELST  420
PTNKMGKSDG DLRMEKPIDA RDEIQYDSSH KSSMHNGVSS RNSFNGGLYN SQAFNASPPY  480
RLRSKRTSIF KSVEKQLRFA VNKEKHDTSN GFSGSTVNEI SHAAKDCSQD TAKKVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-69582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-69582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086262.10.0transcription factor MYB3R-3
RefseqXP_015086263.10.0transcription factor MYB3R-3
SwissprotQ6R0321e-143MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A3Q7HZV40.0A0A3Q7HZV4_SOLLC; Uncharacterized protein
STRINGSolyc09g010820.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-133myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]