PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g003270.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 304aa    MW: 34161.7 Da    PI: 7.7013
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g003270.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031115137123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ C++sF++   L  H  +H
  Sopen09g003270.1 115 YQCKTCNRSFPSFQALGGHRASH 137
                       9***********99999998887 PP
2zf-C2H213.20.00027204226123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  F++   L  H+r+H
  Sopen09g003270.1 204 HECSICGAEFNSGQALGGHMRRH 226
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.54E-8114137No hitNo description
PfamPF139128.3E-13114139IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.679115142IPR007087Zinc finger, C2H2
SMARTSM003550.03115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576674.54E-8199226No hitNo description
PfamPF139125.0E-13203227IPR007087Zinc finger, C2H2
SMARTSM003550.011204226IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577204226IPR007087Zinc finger, C2H2
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEVHDDRGCD QDQQLNMVIK RRRTKRPRPP SPLTLGITTS SCSTVEGASS GELVDGHVAN  60
SLLRSNNCGG MIDDKIVRNT NQEEEDMANC LILLAQGHNF QKSSSLSQSP TLDVYQCKTC  120
NRSFPSFQAL GGHRASHKKP KTLEDQIKNL KSNDHHHHQQ AENNIRLKLN NNDDHVTTLS  180
LQIPNNNNNN SNNNSNNKNK NRVHECSICG AEFNSGQALG GHMRRHRPLP NSIAITSNHH  240
IHEESHHHHH DQQIIKNNTR AFLSLDLNLP APEDDHRPEN SKFTFATKEQ VIVFSASSLV  300
DCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12428KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087325.10.0zinc finger protein ZAT5
TrEMBLA0A3Q7HYQ70.0A0A3Q7HYQ7_SOLLC; Uncharacterized protein
STRINGSolyc09g008440.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.16e-48C2H2 family protein