PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g001470.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 292aa    MW: 34325.8 Da    PI: 7.6943
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g001470.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.62.2e-2545127186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W+ qe+++ + +r e+++++ ++k++k lWe ++ km+e+g++rsp+qCk+kw+nl +ryk +++ e +     ++++p++++l+
  Sopen09g001470.1  45 QWSIQETRDFLMIRAELDQTFMETKRNKLLWEVIATKMKEKGYNRSPEQCKCKWKNLVTRYKGCETVEPEA--L-RQQFPFYNELQ 127
                       7********************************************************************95..3.4589*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122034.27E-2344109No hitNo description
PfamPF138377.8E-2145129No hitNo description
PROSITE profilePS500907.44546102IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDPHLHHHQH HLQQQQHQFS HQSVNIDTTS GGVNIGGGGG DRFPQWSIQE TRDFLMIRAE  60
LDQTFMETKR NKLLWEVIAT KMKEKGYNRS PEQCKCKWKN LVTRYKGCET VEPEALRQQF  120
PFYNELQAIF AARMQRMLWI EAEGGVGGGA SGSKKKAISS DEEEENDDSD GEKVGKKKRK  180
VKGSMMVGSS SGNNNNNLVS SLKEILDDFM KQQMVMEMQW LKAYEAKEEE RRIKEMEWRQ  240
TMEALENERL MMETRWRERE EQRRMREEAR AEKRDALITT LLNKLRREDH NM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A3e-1342106367DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180KKKRKV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087464.10.0trihelix transcription factor GT-3b
RefseqXP_027775347.10.0trihelix transcription factor GT-3b
SwissprotO804506e-69TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A1J6I7M61e-141A0A1J6I7M6_NICAT; Trihelix transcription factor gt-3b
STRINGXP_009799172.11e-141(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.18e-53Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]