PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen08g028450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 224aa MW: 25861.9 Da PI: 9.5844 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.6 | 4.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++gklye+ss Sopen08g028450.1 9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPKGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 62.3 | 1.8e-21 | 88 | 174 | 13 | 99 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++e+l++e+a + +++e L+ ++R+llG +Les ++ eLqq+e+qLeksl++i+++Kn +++eqi +l++ ek l +en +L+kk e Sopen08g028450.1 88 TTEHLKEEVATMTRKLEFLEDSKRKLLGHGLESSTFDELQQVEEQLEKSLSNIKARKNLFFKEQIAQLKEEEKILLKENVDLKKKCE 174 6899********************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.1E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.735 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-32 | 3 | 73 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.20E-43 | 3 | 75 | No hit | No description |
Pfam | PF00319 | 6.8E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.3E-22 | 88 | 174 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.218 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence Send to blast |
MVRGKTELKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIVFSP KGKLYEFSSS 60 STNKTIERYQ KNEKSLGRLN RKLTDQLTTE HLKEEVATMT RKLEFLEDSK RKLLGHGLES 120 STFDELQQVE EQLEKSLSNI KARKNLFFKE QIAQLKEEEK ILLKENVDLK KKCEVLPLTL 180 KPVPQVEKDV ERQIMEVETE LFIGLPETRK SSYCPNLNTL PTSL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-19 | 1 | 87 | 1 | 88 | MEF2C |
5f28_B | 8e-19 | 1 | 87 | 1 | 88 | MEF2C |
5f28_C | 8e-19 | 1 | 87 | 1 | 88 | MEF2C |
5f28_D | 8e-19 | 1 | 87 | 1 | 88 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC244195 | 2e-96 | AC244195.1 Solanum lycopersicum strain Heinz 1706 chromosome 8 clone hba-6a9 map 8, complete sequence. | |||
GenBank | HG975447 | 2e-96 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. | |||
GenBank | HG975520 | 2e-96 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015083980.1 | 1e-159 | agamous-like MADS-box protein AGL19 | ||||
Swissprot | O82743 | 3e-72 | AGL19_ARATH; Agamous-like MADS-box protein AGL19 | ||||
TrEMBL | M1C2V7 | 1e-147 | M1C2V7_SOLTU; Uncharacterized protein | ||||
STRING | Solyc08g080100.2.1 | 1e-152 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G22950.1 | 1e-68 | AGAMOUS-like 19 |
Publications ? help Back to Top | |||
---|---|---|---|
|