PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g028160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRF | ||||||||
Protein Properties | Length: 202aa MW: 23232.8 Da PI: 9.3147 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.5 | 5e-23 | 110 | 153 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 ++ep+rC+RtDGKkWRCs+ v++++k+CE+H+hrgr+rsrk +e Sopen08g028160.1 110 EPEPRRCKRTDGKKWRCSKGVVQNQKYCEKHMHRGRQRSRKCVE 153 69**************************************9776 PP | |||||||
2 | QLQ | 41.5 | 4.2e-15 | 49 | 83 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Q q+L++Q +yKy+ a++PvP +L+ +i+k Sopen08g028160.1 49 FTFPQRQELEQQFFIYKYIEAGLPVPTHLIIPIYK 83 9999*****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.7E-4 | 47 | 83 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.017 | 48 | 83 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.0E-11 | 49 | 81 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.706 | 110 | 154 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.1E-18 | 111 | 152 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MELKISPPKS IATKKVCYNV SNGGEKCSIE LGLNLELSYS NFSTNGYGFT FPQRQELEQQ 60 FFIYKYIEAG LPVPTHLIIP IYKSFTCSLK GLHDVMGYGH MCWEHKSRME PEPRRCKRTD 120 GKKWRCSKGV VQNQKYCEKH MHRGRQRSRK CVELTSSRDI CCSDSSKILS QLCQIHQKCT 180 TGKVSDMPPL IFLKSSNNID HN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015083901.1 | 1e-151 | growth-regulating factor 10-like | ||||
Swissprot | Q6EPP9 | 8e-42 | GRF10_ORYSJ; Growth-regulating factor 10 | ||||
TrEMBL | A0A3Q7HT15 | 1e-101 | A0A3Q7HT15_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g079800.2.1 | 1e-136 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14471 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-33 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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