PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g024650.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 283aa    MW: 31785.6 Da    PI: 7.2578
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g024650.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.46.9e-332680155
           G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  Sopen08g024650.1 26 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 80
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.4552383IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-322381IPR009057Homeodomain-like
SuperFamilySSF466893.05E-162683IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-242681IPR006447Myb domain, plants
PfamPF002498.5E-92879IPR001005SANT/Myb domain
PfamPF143794.6E-24127173IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDRMYNGGGD MGYGYENGVV MTRDPKPRLR WTADLHDRFV DAVTKLGGPD KATPKSVLRL  60
MGLKGLTLYH LKSHLQKYRL GQQTKKQNAA EQNRENIAGE SFRQFSLHSS GPSITSSSMD  120
GMQGEAPISE ALRRQIDVQK RLHEQLEVQQ KLQMRIEAQG KYLQAILDKA QKSLSTDMNS  180
ASAVDETRAQ LTDFNIALSN LMDYVHGHNE DETSTGKGIQ DDTNKDLQRS TYLTEGEQKK  240
IMNIKLEESS VSFDLNSRSS YDFIGMNSAA LEAKQFSNGR LEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-182679154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-182679154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-182679154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-182679154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083593.10.0myb family transcription factor PHL11 isoform X1
SwissprotC0SVS42e-85PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLA0A3Q7HTE60.0A0A3Q7HTE6_SOLLC; Uncharacterized protein
STRINGSolyc08g076010.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44162139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.16e-85G2-like family protein
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]