PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g020340.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 368aa    MW: 41405.2 Da    PI: 6.8558
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g020340.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.3e-18257291135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Sopen08g020340.1 257 CLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRL 291
                       99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.5E-7916346IPR016679Transcription factor, GATA, plant
Gene3DG3DSA:3.30.50.102.0E-14251288IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.677251287IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-16251301IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.8E-15252315No hitNo description
CDDcd002023.10E-14256303No hitNo description
PROSITE patternPS003440257282IPR000679Zinc finger, GATA-type
PfamPF003207.7E-16257291IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MPSRVVHQWN SGYYNTEFSS EKQLISDVKN GEHFVVDDLL DLPNDDGMAT DDMLDLTVIG  60
NSTDCSVVDN SCNSSLSGSN HHPQLLGYRD FPEAHLSSEF AVPYEDMAEL EWLSNFVEES  120
FSSNEMHKMQ MVQAMRNRTD SEIHQFIPDP NRASATSNTI FKPEMPVPAK ARSKRSRMAP  180
GNWASRLLVV SPNTTNPDSS MDTISVQDMS SSSESGMIIP SSGKKTVKCS SAPKKKENNI  240
HHVPSNNTGS NSEGRKCLHC ATDKTPQWRT GPLGPKTLCN ACGVRYKSGR LVPEYRPAAS  300
PTFMLTKHSN SHRKVLEIRR QKEVTQVEHQ HQHQHQHQFL PHNMMFDVSN ADDYLIHQHM  360
GPDFRQLI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084534.10.0GATA transcription factor 12
TrEMBLA0A3Q7HNI50.0A0A3Q7HNI5_SOLLC; GATA transcription factor
STRINGSolyc08g066510.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-73GATA transcription factor 12