PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g004330.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 262aa    MW: 29786.2 Da    PI: 9.71
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g004330.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-171054147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      rg+++++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Sopen08g004330.1 10 RGNFSQDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 54
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-24159IPR009057Homeodomain-like
SuperFamilySSF466892.62E-14462IPR009057Homeodomain-like
PROSITE profilePS5129425.508559IPR017930Myb domain
SMARTSM007176.6E-16957IPR001005SANT/Myb domain
PfamPF002491.1E-151054IPR001005SANT/Myb domain
CDDcd001679.98E-131255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MNYLRPGIKR GNFSQDEEDL IIRLHSLLGN RWSLIAGRLP GRTDNEIKNY WNTHVIKKLK  60
IAGIQPKLHK VHKVSPKKEP KKKPKTENPR KKQDKKKKNN KKKDQSLDTP QVVFVPKPIR  120
ISCGLLRNSS VEDVALLSTS SSPKMLPQTS QVLKKCTISE GSDIHLSAFL KSSSNIVSPS  180
DSYEEGDNNN KKINVITNDD ENVEGKIKEV SFMPFASNLL FDEVLLDGFC DLSNESMLEK  240
VYEEYLQLIS EKCYNQDAPM LM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-1325951108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17985PKKKPKT
27997PKKKPKTENPRKKQDKKKK
38091KKKPKTENPRKK
48097KKKPKTENPRKKQDKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085608.10.0transcription factor MYB7-like
TrEMBLM1A5771e-145M1A577_SOLTU; Uncharacterized protein
STRINGSolyc08g008480.2.11e-164(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-32myb domain protein 3