PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g004130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 360aa MW: 40636.5 Da PI: 5.9407 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.4 | 1.3e-27 | 133 | 193 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ +++prsYYrCt++ +C+++k+v+rs++dp+v++itY+g+Hn++ Sopen08g004130.1 133 DDGYSWRKYGQKDILRAKYPRSYYRCTYRhmqNCWATKHVQRSDDDPTVFDITYRGSHNCH 193 8**************************99899***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.8E-27 | 126 | 194 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-24 | 131 | 194 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-37 | 132 | 194 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-25 | 133 | 193 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.31 | 133 | 191 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MDCASNWEYK TLINELTQGI EHTKQLREHF HSTASTFENQ ELLLQKILSS YEQSLLILNW 60 GGSTVQSPPA LPPSAGAIEY SVSVNGSPKS DDKKRSDQDQ HALINISKKR KSQPTWTEQV 120 KVSAESGFEG PTDDGYSWRK YGQKDILRAK YPRSYYRCTY RHMQNCWATK HVQRSDDDPT 180 VFDITYRGSH NCHHATYSAP QPTSPEKQEF ENQAVYPTGQ QYSNQVLMNL RANLRVNTND 240 LDENDPAACH FSFVPTFSSG MTDDNRHFQI SHVDDNLIGS GYSPSFVSPT TPESNYFSVS 300 TSSQMNGYGM VHNLHHSESD LTDIFSANTS TTSSPIVGDF SLDHLELDPN FPFGNPKFFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-17 | 133 | 192 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 110 | KKRSDQDQHALINISKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015085671.1 | 0.0 | probable WRKY transcription factor 53 | ||||
TrEMBL | A0A3Q7HL08 | 0.0 | A0A3Q7HL08_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g008280.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1843 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 3e-58 | WRKY family protein |