PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g002440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 193aa MW: 22671.9 Da PI: 9.4525 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47 | 4.6e-15 | 13 | 95 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +k+g l +p f+ ++ +g+ +++ + + g +W++k+ ++++ +++GW eFv+++gLk gD+++F+++g++ef v++f Sopen08g002440.1 13 PI--QPGFKNG-LKIPIGFL-KYlKGN--DNVEHAILKRGGYKWSMKV--NGHR----FEAGWVEFVEQHGLKLGDILMFRHEGNMEF--EVSIF 93 44..4556665.********.555666..567889999**********..7777....9************************99999..99999 PP -S CS B3 98 rk 99 ++ Sopen08g002440.1 94 DS 95 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-21 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.41E-21 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.449 | 7 | 96 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.75E-15 | 8 | 94 | No hit | No description |
SMART | SM01019 | 3.7E-16 | 10 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-12 | 18 | 95 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MKIPPKKPHF FKPIQPGFKN GLKIPIGFLK YLKGNDNVEH AILKRGGYKW SMKVNGHRFE 60 AGWVEFVEQH GLKLGDILMF RHEGNMEFEV SIFDSSHCDR EYVEYMEEVG DHTREEIPKK 120 FKFEEDATER PRQKIKSSRK ASSHIIKAAN HHKSFGHSHV ECTIREYSIS RGYLVSFEIH 180 YYLQTLQVNV LHN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-171 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027774851.1 | 1e-126 | B3 domain-containing protein REM9-like | ||||
TrEMBL | A0A3Q7HHD9 | 1e-120 | A0A3Q7HHD9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g006490.1.1 | 1e-121 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 5e-18 | B3 family protein |