PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g002260.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 579aa    MW: 66842.1 Da    PI: 9.6113
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g002260.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.5e-17138223390
                       EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         +++++++k g l+lp +f+ ++++ ++ + +l+++de+ rsW+++l  + +s+r+vl +GW eF +an++kegD v+F+ + ++e+
  Sopen08g002260.2 138 VCTIRPYSFKYGYLCLPLDFVMKNNLRHKIG-DLIIRDEKQRSWNIRL-NSFSSKRFVLNGGWPEFSNANDIKEGDEVMFEIVTNEEK 223
                       567899******************9998887.9***************.4667788*************************8765443 PP
2B337.64e-12472550686
                       ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       ++++ l ++ l +p kfa ++++ k ++ +l+++d + rsW+v+l  r + + +++++GWk+  +   +kegD ++F+ + 
  Sopen08g002260.2 472 VSPYCLVTDTLLIPEKFALANDLFKIKKCDLIIRDDNDRSWNVTL--REHNNYVFIKDGWKKIRDTYYIKEGDQIMFEIVT 550
                       5677777899***********666666679***************..*******************************664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.39E-11899IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-11899IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.9651099IPR003340B3 DNA binding domain
SMARTSM010190.00111399IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-17131231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-17131230IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-11135216No hitNo description
SMARTSM010191.8E-13136232IPR003340B3 DNA binding domain
PROSITE profilePS5086313.747136231IPR003340B3 DNA binding domain
PfamPF023629.8E-15137224IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-12462554IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-12463559IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.335467562IPR003340B3 DNA binding domain
SMARTSM010193.5E-7468563IPR003340B3 DNA binding domain
PfamPF023629.3E-10471553IPR003340B3 DNA binding domain
CDDcd100176.38E-9479547No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MATMKGYSEK PSFLMFISPS LKQGFTFPDE FLKHLKGHDQ YEHAILRWAN KNWPVKLNGV  60
RLEDGLEKFV EQNNLEEGEI LLIEHEGNMK FEAIRFDPSN QCEILEVQPR APKVVKSSDE  120
SKSKEAATQK HSGCPYFVCT IRPYSFKYGY LCLPLDFVMK NNLRHKIGDL IIRDEKQRSW  180
NIRLNSFSSK RFVLNGGWPE FSNANDIKEG DEVMFEIVTN EEKPIWQFKK KASNNVKSSL  240
LVEPPKVKSG KPSQRRDIKD MMVDVVHMRV DKPLHKNKSS FVAKTPKSKS RELPQRQELE  300
NQTLKAFTHK SFDESNNNIK SSPLAKTPKP KSRKPAERDD FEDRSLEAVT HKPNDKSNHK  360
NLNSSPPAEP SKLKLGGLHQ RQEFEERTFE AATHKSLDKP THKKLKSTPL AEPSQSKPGE  420
LPQKQNFEDQ TTNVVTHKPH VESNYYTTSK EASPLKDAPH KSSDDPYILI NVSPYCLVTD  480
TLLIPEKFAL ANDLFKIKKC DLIIRDDNDR SWNVTLREHN NYVFIKDGWK KIRDTYYIKE  540
GDQIMFEIVT GGDKPIWKFH GKISKEFVKM IQQNGLNTD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-129HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084059.10.0B3 domain-containing protein REM13-like
TrEMBLA0A3Q7HH760.0A0A3Q7HH76_SOLLC; Uncharacterized protein
STRINGSolyc08g006280.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2098733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.15e-14B3 family protein