PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g002260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 565aa MW: 65351.5 Da PI: 9.5534 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.2 | 5.3e-17 | 138 | 223 | 3 | 90 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +++++++k g l+lp +f+ ++++ ++ + +l+++de+ rsW+++l + +s+r+vl +GW eF +an++kegD v+F+ + ++e+ Sopen08g002260.1 138 VCTIRPYSFKYGYLCLPLDFVMKNNLRHKIG-DLIIRDEKQRSWNIRL-NSFSSKRFVLNGGWPEFSNANDIKEGDEVMFEIVTNEEK 223 567899******************9998887.9***************.4667788*************************8765443 PP | |||||||
2 | B3 | 37.6 | 3.8e-12 | 458 | 536 | 6 | 86 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++++ l ++ l +p kfa ++++ k ++ +l+++d + rsW+v+l r + + +++++GWk+ + +kegD ++F+ + Sopen08g002260.1 458 VSPYCLVTDTLLIPEKFALANDLFKIKKCDLIIRDDNDRSWNVTL--REHNNYVFIKDGWKKIRDTYYIKEGDQIMFEIVT 536 5677777899***********666666679***************..*******************************664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.33E-11 | 8 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-11 | 8 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.965 | 10 | 99 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0011 | 13 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-17 | 131 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-17 | 131 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.14E-11 | 135 | 216 | No hit | No description |
SMART | SM01019 | 1.8E-13 | 136 | 232 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.747 | 136 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.4E-15 | 137 | 224 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-12 | 448 | 540 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-12 | 449 | 545 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.335 | 453 | 548 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-7 | 454 | 549 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.9E-10 | 457 | 539 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.13E-9 | 465 | 533 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MATMKGYSEK PSFLMFISPS LKQGFTFPDE FLKHLKGHDQ YEHAILRWAN KNWPVKLNGV 60 RLEDGLEKFV EQNNLEEGEI LLIEHEGNMK FEAIRFDPSN QCEILEVQPR APKVVKSSDE 120 SKSKEAATQK HSGCPYFVCT IRPYSFKYGY LCLPLDFVMK NNLRHKIGDL IIRDEKQRSW 180 NIRLNSFSSK RFVLNGGWPE FSNANDIKEG DEVMFEIVTN EEKPIWQFKK KASNNVKSSL 240 LVEPPKVKSG KPSQRRDIKD MMVDVVHMRV DKPLHKNKSS FVAKTPKSKS RELPQRQELE 300 NQTLKAFTHK SFDESNNNIK SSPLAKTPKP KSRKPAERDD FEDRSLEAVT HKPNEPSKLK 360 LGGLHQRQEF EERTFEAATH KSLDKPTHKK LKSTPLAEPS QSKPGELPQK QNFEDQTTNV 420 VTHKPHVESN YYTTSKEASP LKDAPHKSSD DPYILINVSP YCLVTDTLLI PEKFALANDL 480 FKIKKCDLII RDDNDRSWNV TLREHNNYVF IKDGWKKIRD TYYIKEGDQI MFEIVTGGDK 540 PIWKFHGKIS KEFVKMIQQN GLNTD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-129 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015084059.1 | 0.0 | B3 domain-containing protein REM13-like | ||||
TrEMBL | A0A3Q7HH76 | 0.0 | A0A3Q7HH76_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g006280.1.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 4e-14 | B3 family protein |