PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g002250.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 676aa    MW: 77805.5 Da    PI: 8.4982
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g002250.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72.1e-13169252197
                       EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                       ffk l     +k++ l +p  f+ ++ +g +e++    l  + g++W vkl  ++++    l++GW +F+++++Lk gD+++F+++g+ ef  
  Sopen08g002250.2 169 FFKPL--LPGFKNS-LKIPDGFL-KYlEGCEEKG--RALLKKGGKKWVVKL--NGQK----LEEGWGQFAEEHDLKLGDMLIFRHEGDLEF-- 247
                       66777..6677776.********.5557776665..677799*********..8888....***********************8886555.. PP

                       EEEEE CS
                B3  93 vvkvf 97 
                        v+vf
  Sopen08g002250.2 248 DVTVF 252
                       77776 PP
2B346.66.3e-15305385588
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       +++++ l++g l++p kfa+++g+ + ++  l+++de+ rsW++++    + +++++++ W+eF  an++k gD ++F+++++ 
  Sopen08g002250.2 305 TVKPYCLRNGYLRVPCKFAKANGLTN-KECGLIIRDERQRSWNLRI--YTSCSQVYIGGRWSEFRAANDIKKGDQIMFEVVSNG 385
                       578999****************7664.3346999************..88888999***********************88763 PP
3B344.13.8e-14436525699
                       ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       ++ + l++g l++p kfa+++ +  +++ +l+++de+ rsW++++    + + + +++ W++ + an++k+gD ++F+++  +++++v k++r
  Sopen08g002250.2 436 VKQYFLANGYLRVPSKFAKANCLT-NKNYDLIIRDERQRSWNLRI--YTSCSLVCIGGRWSQLCAANDIKAGDQIMFEVVT-NGKQPVWKIHR 524
                       5788999**************544.46789***************..77776799***********************876.66778998888 PP

                       S CS
                B3  99 k 99 
                       k
  Sopen08g002250.2 525 K 525
                       6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-18162256IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.28166255IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-18167261IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-10167253No hitNo description
SMARTSM010193.1E-13169255IPR003340B3 DNA binding domain
PfamPF023629.0E-10177251IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-16299389IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.011301395IPR003340B3 DNA binding domain
SMARTSM010193.7E-7301396IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-16301390IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-13304387IPR003340B3 DNA binding domain
CDDcd100179.73E-13307380No hitNo description
Gene3DG3DSA:2.40.330.104.2E-15426522IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-15427522IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.053431525IPR003340B3 DNA binding domain
CDDcd100171.17E-9432510No hitNo description
SMARTSM010198.5E-9432526IPR003340B3 DNA binding domain
PfamPF023622.1E-12436525IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MEANTSRMVT LNGVNDVIWK GKMEDLLYVK NFYKPVFTTV KPDNMTDEEW NLLHRQKKYI  60
ERVLERFNMK NAKPVSIPLA GHMKLSKKMC PTAREEKENM AKVPYFSVVG SLMYAMVCTR  120
PDIAQAVGVV SRFLENPEKE HWEAVKWILS SIYCILFAAM EVTSVQPHFF KPLLPGFKNS  180
LKIPDGFLKY LEGCEEKGRA LLKKGGKKWV VKLNGQKLEE GWGQFAEEHD LKLGDMLIFR  240
HEGDLEFDVT VFNLSHCDRE YAEYEEEEEE VRTVEETSTN FEFKGISHAE GSTHIPFGQS  300
QFICTVKPYC LRNGYLRVPC KFAKANGLTN KECGLIIRDE RQRSWNLRIY TSCSQVYIGG  360
RWSEFRAAND IKKGDQIMFE VVSNGEQPIW NFHEYAKNLQ QEETEAYTFE ETCKKLELNE  420
AAPHDPSDQS QFVYTVKQYF LANGYLRVPS KFAKANCLTN KNYDLIIRDE RQRSWNLRIY  480
TSCSLVCIGG RWSQLCAAND IKAGDQIMFE VVTNGKQPVW KIHRKVIFTM VTPKITKTAE  540
TTHQLPKLIS TPSKALLFLS ANDPHQSQRN KILCDALPLA SSSFPAKQQV LHRPWHHLRH  600
TKPTKHILPL SPGQCAVEDD QRLHPPPCIN NTNRIHVQTT FLFEMFSIVK ITPLAAYQVK  660
KHTFFGSLGI QIDFTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085511.10.0B3 domain-containing protein REM14-like isoform X5
TrEMBLA0A3Q7HH760.0A0A3Q7HH76_SOLLC; Uncharacterized protein
STRINGXP_009612433.11e-142(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.14e-40B3 family protein