PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g002250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 671aa MW: 77340 Da PI: 8.4974 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.7 | 2.1e-13 | 169 | 252 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ffk l +k++ l +p f+ ++ +g +e++ l + g++W vkl ++++ l++GW +F+++++Lk gD+++F+++g+ ef Sopen08g002250.1 169 FFKPL--LPGFKNS-LKIPDGFL-KYlEGCEEKG--RALLKKGGKKWVVKL--NGQK----LEEGWGQFAEEHDLKLGDMLIFRHEGDLEF-- 247 66777..6677776.********.5557776665..677799*********..8888....***********************8886555.. PP EEEEE CS B3 93 vvkvf 97 v+vf Sopen08g002250.1 248 DVTVF 252 77776 PP | |||||||
2 | B3 | 46.5 | 6.8e-15 | 300 | 380 | 5 | 88 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +++++ l++g l++p kfa+++g+ + ++ l+++de+ rsW++++ + +++++++ W+eF an++k gD ++F+++++ Sopen08g002250.1 300 TVKPYCLRNGYLRVPCKFAKANGLTN-KECGLIIRDERQRSWNLRI--YTSCSQVYIGGRWSEFRAANDIKKGDQIMFEVVSNG 380 568999****************7664.3346999************..88888999***********************88763 PP | |||||||
3 | B3 | 44.1 | 3.8e-14 | 431 | 520 | 6 | 99 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ + l++g l++p kfa+++ + +++ +l+++de+ rsW++++ + + + +++ W++ + an++k+gD ++F+++ +++++v k++r Sopen08g002250.1 431 VKQYFLANGYLRVPSKFAKANCLT-NKNYDLIIRDERQRSWNLRI--YTSCSLVCIGGRWSQLCAANDIKAGDQIMFEVVT-NGKQPVWKIHR 519 5788999**************544.46789***************..77776799***********************876.66778998888 PP S CS B3 99 k 99 k Sopen08g002250.1 520 K 520 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-18 | 162 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.28 | 166 | 255 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.46E-18 | 167 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.19E-10 | 167 | 253 | No hit | No description |
SMART | SM01019 | 3.1E-13 | 169 | 255 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.9E-10 | 177 | 251 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-16 | 294 | 384 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-16 | 296 | 385 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.011 | 296 | 390 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-7 | 296 | 391 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-13 | 299 | 382 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.03E-12 | 302 | 375 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-15 | 421 | 517 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-15 | 422 | 517 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.053 | 426 | 520 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.22E-9 | 427 | 505 | No hit | No description |
SMART | SM01019 | 8.5E-9 | 427 | 521 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-12 | 431 | 520 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 671 aa Download sequence Send to blast |
MEANTSRMVT LNGVNDVIWK GKMEDLLYVK NFYKPVFTTV KPDNMTDEEW NLLHRQKKYI 60 ERVLERFNMK NAKPVSIPLA GHMKLSKKMC PTAREEKENM AKVPYFSVVG SLMYAMVCTR 120 PDIAQAVGVV SRFLENPEKE HWEAVKWILS SIYCILFAAM EVTSVQPHFF KPLLPGFKNS 180 LKIPDGFLKY LEGCEEKGRA LLKKGGKKWV VKLNGQKLEE GWGQFAEEHD LKLGDMLIFR 240 HEGDLEFDVT VFNLSHCDRE YAEYEEEEEE VRTVEETSTN FEFKEGSTHI PFGQSQFICT 300 VKPYCLRNGY LRVPCKFAKA NGLTNKECGL IIRDERQRSW NLRIYTSCSQ VYIGGRWSEF 360 RAANDIKKGD QIMFEVVSNG EQPIWNFHEY AKNLQQEETE AYTFEETCKK LELNEAAPHD 420 PSDQSQFVYT VKQYFLANGY LRVPSKFAKA NCLTNKNYDL IIRDERQRSW NLRIYTSCSL 480 VCIGGRWSQL CAANDIKAGD QIMFEVVTNG KQPVWKIHRK VIFTMVTPKI TKTAETTHQL 540 PKLISTPSKA LLFLSANDPH QSQRNKILCD ALPLASSSFP AKQQVLHRPW HHLRHTKPTK 600 HILPLSPGQC AVEDDQRLHP PPCINNTNRI HVQTTFLFEM FSIVKITPLA AYQVKKHTFF 660 GSLGIQIDFT G |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015085508.1 | 0.0 | B3 domain-containing protein REM14-like isoform X2 | ||||
Refseq | XP_015085511.1 | 0.0 | B3 domain-containing protein REM14-like isoform X5 | ||||
TrEMBL | A0A3Q7HH76 | 0.0 | A0A3Q7HH76_SOLLC; Uncharacterized protein | ||||
STRING | XP_009612433.1 | 1e-142 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 3e-40 | B3 family protein |