PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g002240.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 445aa    MW: 51918.8 Da    PI: 9.8068
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g002240.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.52.8e-1417961099
                      HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                       +++g l +p  f+ ++  g++  +  +  + ++ g++W vk    +++   + ++ WkeFv++++Lk gD++vFk++g++ef   v++f++
  Sopen08g002240.1 17 GFENG-LKIPLGFL-KYlkGHD--Q-HEHAILTRGGKKWLVKA--HGRR---LEEGSWKEFVEEHKLKFGDVLVFKYEGDMEF--DVSIFDS 96
                      55665.9*******.6655444..3.35777899*********..5555...67899**********************9999..9999986 PP
2B337.34.8e-12129203478
                       E-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                B3   4 vltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                        +++ + l++g l++pk+fa ++   +g+k+ +  +++  ++ + W++ l  + +  ++++++GW +F  +n LkegD
  Sopen08g002240.1 129 CTIRQYCLSRGFLWIPKDFAIANgfiKGNKKYG-LIIIDERQTKLWNLML--KSCNTKVYIADGWGKFSADNCLKEGD 203
                       56788999***************9985554443.677777999*******..888888*******************9 PP
3B350.44e-16227315598
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       +++++ l+++ l++p++fa ++ ++  ++ +++++d + rsW++++    +++ + +++GW+eF+  n  kegD ++F+ ++ +++++ ++++
  Sopen08g002240.1 227 TIRPYCLTKHFLRIPRQFAIKNRLNG-RKCKIIVKD-KQRSWTFNV--YTNGQNTHIGRGWREFCITNCSKEGDRFMFEIIS-NGETPIFTIH 314
                       56789999**************7774.445899999.88*******..66666666999********************998.6666888776 PP

                       - CS
                B3  98 r 98 
                       +
  Sopen08g002240.1 315 D 315
                       5 PP
4B348.91.2e-15352430587
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       ++++++ ++  l+lp +f++++g+     ++++l de+ rsW+v +   +++ ++ +++GW +F +ang+++gD+  F+l+++
  Sopen08g002240.1 352 TIKPYTINNPVLYLPMDFVKSNGLMR--RRKMILIDEKRRSWSVWI--GRTGHHFAIKRGWTQFRNANGIQVGDTYKFELTNN 430
                       56889999999***********9985..458***************..999999*************************9764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-19397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-18397IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.31797IPR003340B3 DNA binding domain
CDDcd100174.03E-14895No hitNo description
SMARTSM010192.5E-151097IPR003340B3 DNA binding domain
PfamPF023622.1E-111996IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-10124203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-12125203IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.714126221IPR003340B3 DNA binding domain
SMARTSM010190.0055126217IPR003340B3 DNA binding domain
PfamPF023623.1E-9129203IPR003340B3 DNA binding domain
CDDcd100171.90E-8134203No hitNo description
SuperFamilySSF1019363.73E-15220312IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-16221312IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.1E-15223317IPR003340B3 DNA binding domain
PROSITE profilePS5086310.997223317IPR003340B3 DNA binding domain
PfamPF023621.4E-14227315IPR003340B3 DNA binding domain
CDDcd100171.86E-12231315No hitNo description
Gene3DG3DSA:2.40.330.105.4E-18345437IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-18346439IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.084348441IPR003340B3 DNA binding domain
SMARTSM010193.8E-13349442IPR003340B3 DNA binding domain
PfamPF023621.0E-13352431IPR003340B3 DNA binding domain
CDDcd100174.30E-12363440No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEIPPKKPHF FKPILPGFEN GLKIPLGFLK YLKGHDQHEH AILTRGGKKW LVKAHGRRLE  60
EGSWKEFVEE HKLKFGDVLV FKYEGDMEFD VSIFDSSHYC DKEYAKYEDE DEEGEATHDK  120
LLSQSYFECT IRQYCLSRGF LWIPKDFAIA NGFIKGNKKY GLIIIDERQT KLWNLMLKSC  180
NTKVYIADGW GKFSADNCLK EGDRKGLSDE EAACKDMDLS DTHFICTIRP YCLTKHFLRI  240
PRQFAIKNRL NGRKCKIIVK DKQRSWTFNV YTNGQNTHIG RGWREFCITN CSKEGDRFMF  300
EIISNGETPI FTIHDLRGSS SLQPEVKKKK SKAKRKLKPQ VSVDVNSHFI STIKPYTINN  360
PVLYLPMDFV KSNGLMRRRK MILIDEKRRS WSVWIGRTGH HFAIKRGWTQ FRNANGIQVG  420
DTYKFELTNN VTIPIVHFHC KYSGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375380MRRRKM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085030.21e-168B3 domain-containing protein REM10-like isoform X3
TrEMBLM1DTI71e-164M1DTI7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000941511e-165(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-37B3 family protein