PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g002200.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 144aa    MW: 16942.1 Da    PI: 5.0443
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g002200.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.6e-122504399
                      S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      g++W +k+  ++ +    l++GW++F+++++L++gD++vFk++g++ef   v +f++
  Sopen08g002200.2  2 GKKWLMKV--NGWR----LEEGWEKFAEEHDLQSGDILVFKHEGDMEF--EVPIFDS 50
                      89999999..5555....9***********************999999..8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.493151IPR003340B3 DNA binding domain
SuperFamilySSF1019361.67E-13257IPR015300DNA-binding pseudobarrel domain
CDDcd100175.43E-11249No hitNo description
Gene3DG3DSA:2.40.330.106.7E-14259IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-8250IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MGKKWLMKVN GWRLEEGWEK FAEEHDLQSG DILVFKHEGD MEFEVPIFDS SHCDREYTEY  60
LLEGVDNAEE TFKKVEFKEA ASHNCWGQSH YQCIVRPNYI SNGYLVSLKN SFPLNNSRYF  120
RLKESFAPFY FSLLCSLELC TAKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-128HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084058.11e-69putative B3 domain-containing protein REM15
TrEMBLA0A3Q7HK077e-61A0A3Q7HK07_SOLLC; Uncharacterized protein
TrEMBLM1AKH85e-62M1AKH8_SOLTU; Uncharacterized protein
STRINGSolyc08g006230.2.17e-65(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.13e-14B3 family protein