PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen07g034400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 738aa MW: 79869.8 Da PI: 6.5151 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.4 | 1.2e-32 | 323 | 380 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers +++++ei+Y+g Hnh+k Sopen07g034400.1 323 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPTCPVKKKVERSP-EGHITEIIYKGAHNHPK 380 8****************************************.***************85 PP | |||||||
2 | WRKY | 104.1 | 7.5e-33 | 534 | 592 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+ Sopen07g034400.1 534 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHD 592 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.905 | 317 | 381 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.0E-28 | 320 | 381 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-25 | 321 | 381 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.1E-36 | 322 | 380 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.2E-25 | 323 | 379 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.4E-37 | 519 | 594 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-28 | 526 | 594 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.733 | 529 | 594 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-38 | 534 | 593 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.1E-25 | 535 | 592 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 738 aa Download sequence Send to blast |
MGGFDDHVAI MGDWMPPSPS PRTFFSSLLG DDGGSRLSFE GTKETSGNLT SGPQEHVGNS 60 DGVDRAPAAI SEPQPVKLSA PSDQKMNSRG GGLLERIAAR AGFNAPKLNT ESLRPADLRQ 120 NQGVRSPYLT IPPGLSPTTL LESPVFLSNS LVQPSPTTGK FLFSSGIDNR NSALMMEDTD 180 KRKDNALESI NSSSFSFKPV PETAPSLFPG TTSRSWLQVN PSNFSQQGFP NIEVSVHSQN 240 SLVSHRVEAT QNPTQNGTLQ QSSDFPRFSA EKDVMANNVT LDSRTFQTVG SAVDHSPPLD 300 EPQDEDIDQR GGGDPNVAGA PAEDGYNWRK YGQKQVKGSE YPRSYYKCTH PTCPVKKKVE 360 RSPEGHITEI IYKGAHNHPK PPPNRRLALG STNSLGDLQV DGAEQGASGV NGDLGQANFH 420 KAPGGGGGFD WRNNNLDANL GSEYCNRSAP FSAQNNTRLE SGDAVDVSSN FSNDEDEDDR 480 GTHGSVSQGY EGEGDETESK RRKLETYSAD MTGATRAIRE PRVVVQTTSE VDILDDGYRW 540 RKYGQKVVKG NPNPRSYYKC TSAGCNVRKH VERASHDLKS VITTYEGKHN HDVPAARNSS 600 HVNSGASNTH PASVTAPAQN HLHRPEAAQL QNAMARFDRQ PSLGSFGLSG RPQLGPNPGF 660 SYGMNQQGGL SSLAMAGFHP NQNKPGEVPM HPYLGQPRPM HDMGFMFPKE EPKVEPLSES 720 GPTAYQQFLN SLSLGPQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-36 | 323 | 595 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-36 | 323 | 595 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ303343 | 0.0 | AJ303343.1 Lycopersicon esculentum mRNA for hypothetical protein (ORF1), clone 10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015082321.1 | 0.0 | probable WRKY transcription factor 2 isoform X1 | ||||
Refseq | XP_015082322.1 | 0.0 | probable WRKY transcription factor 2 isoform X1 | ||||
Refseq | XP_015082323.1 | 0.0 | probable WRKY transcription factor 2 isoform X1 | ||||
Refseq | XP_027774272.1 | 0.0 | probable WRKY transcription factor 2 isoform X1 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | Q9ARC7 | 0.0 | Q9ARC7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g066220.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3711 | 23 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-169 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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