PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g030310.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family STAT
Protein Properties Length: 703aa    MW: 79455.8 Da    PI: 6.3325
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g030310.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT179.26.1e-562133331121
              STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 
                       +dv+l++ +++p++ + evvasL+y+d+ ++vek+ da+a LL+sydG+e++s+drp+k++ GrasfklkisqLsskcdnrLfri+f+ip+l 
  Sopen07g030310.1 213 IDVTLMDNFSRPMTEEAEVVASLVYSDDNTLVEKPVDADAALLTSYDGIEYASSDRPSKVISGRASFKLKISQLSSKCDNRLFRIRFDIPRLG 305
                       69******************************************************************************************* PP

              STAT  94 kypfleavskpirCisrsrntrsssltk 121
                       kypfle++s+pirCisr+r+tr++sl+ 
  Sopen07g030310.1 306 KYPFLEVFSRPIRCISRNRSTRATSLML 333
                       **********************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2003.4E-616157IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498998.53E-821135IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.101.3E-4601663IPR000980SH2 domain
SuperFamilySSF555504.98E-6601667IPR000980SH2 domain
PROSITE profilePS500019.515605703IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MGVQDYSFLR DLQVEFKNYE VTNKFSLCFW LYLNEPSTLP STILYQEHPD VTSHAPFLLL  60
DDRKKILLFP SLISSHSNIT SWREVAHAVS ESEFPTKKWV HVGCEVTQDL LHLYFDGKIV  120
GEKCLTSSLS NDMGSDNSRI SLTCISGKNS QLDGYVHSSE LFPMLSTIEN HYVKDPPVQL  180
SIDSSSAYEI EEDSDGVWSI VGGKASCRRN FDIDVTLMDN FSRPMTEEAE VVASLVYSDD  240
NTLVEKPVDA DAALLTSYDG IEYASSDRPS KVISGRASFK LKISQLSSKC DNRLFRIRFD  300
IPRLGKYPFL EVFSRPIRCI SRNRSTRATS LMLKKSSLGI HLLNGSQSPV LDDGSYDRPC  360
IVREAKQSPS SKRVKLGQEK LCANFKDDFV LKQANGGSRS HSWTSEDNHA HQNSLVARPV  420
SHGGAENFSS DSENSETTNS PVDDLPSNRD PISDMVVFKY CLADLNERRL LLKEMAMTAK  480
EEELVTFAER VSLFSGCSHH RHQISISKRL IEEGINCWNL ISNYNHHVPW ENLVSGLQEH  540
FLKMTFGRIR SLTHQDFNLL RRVSGCQDLV SQDNFEKLWC WLYPVAFTLS QQCISSLWGS  600
TSPVWIEGFI TKEEAESSLT ILGALQEPGT YILRFPTSRS WPHPDAGNLV VTYVGSDYAI  660
HHRLISLEFI YSSGVKGTTI RPIQDMLLEQ PELRRLGRIV RSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080782.10.0SH2 domain-containing protein A
TrEMBLA0A3Q7HGF00.0A0A3Q7HGF0_SOLLC; Uncharacterized protein
STRINGSolyc07g062050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93942325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.10.0SH2 domain protein A