PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G17040.1 | ||||||||
Common Name | ATSHA, SHA, STATLA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | STAT | ||||||||
Protein Properties | Length: 641aa MW: 72636.3 Da PI: 5.5 | ||||||||
Description | SH2 domain protein A | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 188.4 | 8.5e-59 | 221 | 339 | 1 | 118 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk.ypf 97 ldvvl+na+gqpv+kdv+vvasLlyadsg++vek++d ea+LL+sy+G+e+s+ed+p++ll+G+asfk+k+sqLssk+d+rLf+ikfeip++k+ ypf AT1G17040.1 221 LDVVLTNAIGQPVHKDVKVVASLLYADSGTHVEKRSDFEAFLLVSYEGIELSAEDKPCNLLNGCASFKFKLSQLSSKSDKRLFCIKFEIPEVKAnYPF 318 8*******************************************************************************************988*** PP STAT 98 leavskpirCisrsrntrsss 118 le+v+++irCisr+r++ ss AT1G17040.1 319 LETVTNQIRCISRNRDSVSSM 339 ***************976654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.200 | 4.0E-6 | 23 | 147 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Pfam | PF13385 | 2.8E-8 | 25 | 180 | No hit | No description |
SuperFamily | SSF49899 | 3.6E-9 | 27 | 168 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
CDD | cd10338 | 2.61E-68 | 536 | 641 | No hit | No description |
SuperFamily | SSF55550 | 1.36E-14 | 544 | 634 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.404 | 547 | 641 | IPR000980 | SH2 domain |
Gene3D | G3DSA:3.30.505.10 | 2.4E-10 | 552 | 633 | IPR000980 | SH2 domain |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence Send to blast |
MAGDCAIDTE KYSLLEDFNV DVEVENKAFE TFSLCFWVYL LDSTTYPSAI IRQVHSDMSV 60 SAPFLVLDEN KKMMLLPLTL LHREAPDPVN TSSWTEVPNV STTAKFPLQK WVHVGCEVSR 120 NYMRLYICGE LVGEQVLTSL MTNGTNSDCA RKISLFSVGG DGYSVQGFIH SAEVLPSNLS 180 ASYHYTKDPP LWLSVDKPST SGIELDEDGV WSVVSGTFCS LDVVLTNAIG QPVHKDVKVV 240 ASLLYADSGT HVEKRSDFEA FLLVSYEGIE LSAEDKPCNL LNGCASFKFK LSQLSSKSDK 300 RLFCIKFEIP EVKANYPFLE TVTNQIRCIS RNRDSVSSMK RIRLGEEKVS ESKIVNGNGT 360 SMEWRPQNHE EDNSSTDSEN TEMRDSTAFR RYSIPDWIIF KYCLGNLTER ALLLKEITNN 420 SSDEEVSEFA DQVSLYSGCS HHGYQIKMAR KLIAEGTNAW NLISRNYRHV HWDNVVIEIE 480 EHFMRIAKCS SRSLTHQDFD LLRRICGCYE YITQENFETM WCWLFPVASA VSRGLINGMW 540 RSASPKWIEG FVTKEEAERS LQNQVPGTFI LRFPTSRSWP HPDAGSVVVT YVGHDLVIHH 600 RLLTINHICD SSERYTDAKQ LQDMLLAEPE LSRLGRIIRG I |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.41855 | 0.0 | silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 262534_at | 0.0 | ||||
Expression Atlas | AT1G17040 | - | ||||
AtGenExpress | AT1G17040 | - | ||||
ATTED-II | AT1G17040 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G17040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G17040 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT046180 | 0.0 | BT046180.1 Arabidopsis thaliana unknown protein (At1g17040) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_173147.2 | 0.0 | SH2 domain protein A | ||||
Swissprot | B5X561 | 0.0 | SHA_ARATH; SH2 domain-containing protein A | ||||
TrEMBL | A0A178WKF6 | 0.0 | A0A178WKF6_ARATH; STATLA | ||||
STRING | AT1G17040.2 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT1G17040.1 |
Entrez Gene | 838274 |
iHOP | AT1G17040 |
wikigenes | AT1G17040 |
Publications ? help Back to Top | |||
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