PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g003890.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 211aa    MW: 24504.1 Da    PI: 9.4802
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g003890.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.8e-181259148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg W +eEd++l+++v+ +G g+W+tI+++ g+ R++k+c++rw +yl
  Sopen07g003890.1 12 RGFWKPEEDLILKNCVETHGEGNWATISEKSGLMRSGKSCRLRWKNYL 59
                      799*******************************************97 PP
2Myb_DNA-binding49.97.4e-1665110148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg ++++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Sopen07g003890.1  65 RGMMSEDEKDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEVKNFWNTHL 110
                       6789******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.716163IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-21762IPR009057Homeodomain-like
SuperFamilySSF466896.74E-299106IPR009057Homeodomain-like
SMARTSM007172.1E-141161IPR001005SANT/Myb domain
PfamPF002492.5E-151259IPR001005SANT/Myb domain
CDDcd001676.67E-111559No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2263113IPR009057Homeodomain-like
SMARTSM007179.3E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129418.58664114IPR017930Myb domain
PfamPF002492.1E-1465110IPR001005SANT/Myb domain
CDDcd001672.74E-1068110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MKDKEVKTRM KRGFWKPEED LILKNCVETH GEGNWATISE KSGLMRSGKS CRLRWKNYLR  60
PNIKRGMMSE DEKDLIIRLH KLLGNRWSLI AGRLPGRTDN EVKNFWNTHL NNKRSCRGKK  120
KHVKSKEANT QSTQGKMQEY PAETVSNQEV ATKTALDSWI EEMQDLLSPP TMNNVPFLED  180
EPFIPILDDI VLLEAFTSTG KETWNEIQPF L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-22121137107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1220540.0AF122054.1 Solanum tuberosum clone 9 tuber-specific and sucrose-responsive element binding factor (TSF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082808.11e-156transcription factor MYB82-like
SwissprotQ9LTF78e-61MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A3Q7H7Q81e-154A0A3Q7H7Q8_SOLLC; Uncharacterized protein
STRINGSolyc07g008010.2.11e-155(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.13e-63myb domain protein 82