PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g034990.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 620aa    MW: 70479.8 Da    PI: 5.2266
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g034990.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.34.3e-21484580295
                       EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                       +kvl++sdv+++gr+vlpkk ae+h   ++++ ++ + +ed  ++r+W++k+++  ++ks++y+l+ ++ +FvkangL+egDf+v++   + +
  Sopen06g034990.1 484 QKVLKQSDVNNLGRIVLPKKEAERHlpHLETRDGISIAMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVKANGLQEGDFIVIYA--DmK 573
                       79*************************999999********7778*******99777777777777.********************5..448 PP

                       EE..EEE CS
                B3  89 efelvvk 95 
                       +++++++
  Sopen06g034990.1 574 CGKYLIR 580
                       8877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-28475589IPR015300DNA-binding pseudobarrel domain
CDDcd100156.89E-34481582No hitNo description
SuperFamilySSF1019368.83E-23482575IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.6E-19483585IPR003340B3 DNA binding domain
PROSITE profilePS5086310.771483585IPR003340B3 DNA binding domain
PfamPF023622.3E-17484579IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MERELHNEDE NTNLVVSVDD DIQMLQQQHD CTDFDPMDET DIWLNENFST DFTSLQDFPC  60
MSSSSSTSFS PPTESDPSSG VVLKSDADEQ DFDKKIDTIG DQECLNVMDN VGYIDVNEFL  120
DPMISFLHNE NPQEQQQQQQ QQQLLPQEDD DQGFSFFQGD SELALMFFEW LKQNRDYISA  180
EDMRSIKLKR STIESASKRL GSTKEGKKQL LRLILDWVEQ HRLQKKQMRE AEAINQQALQ  240
NSVPYNFDPN ACFYPPQWIP NAPFPDSSTP IMTGPIQGYT SDPYSNGGLF PPPYSQTMSG  300
GATSPASAEY QPMDASQSWS PSQFTMATTS QYNPFPENDS TNNVAMPDQS LFGAQYDPYQ  360
LFDGNGEIVP RLGSCATKEA RKNRMARQRR LRPHHYRHQT RNPRQITNEQ SVMMAGEIKN  420
CVMTQANNPG NWVCWPSPPM AMVSQSLPPE RPAMQSQNQQ KQVSTSADKK QAFKSEKNLK  480
FLLQKVLKQS DVNNLGRIVL PKKEAERHLP HLETRDGISI AMEDIGTSRV WNMKYRFWPN  540
NKSRMYLLEN TGDFVKANGL QEGDFIVIYA DMKCGKYLIR GVKVRQNGPK SEGKKQMKKN  600
PRKLSSAAAI SSSPVAQAVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-374795831105B3 domain-containing transcription factor FUS3
6j9b_D2e-374795831105B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773897.10.0B3 domain-containing transcription factor ABI3-like
TrEMBLA0A3Q7H2K30.0A0A3Q7H2K3_SOLLC; Uncharacterized protein
STRINGSolyc06g083600.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-112B3 family protein