PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g034980.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 575aa    MW: 64895.8 Da    PI: 6.8462
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g034980.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.61.6e-20442538295
                       EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                       +kvl++sdv+ +gr+vlpkk ae+h  +++++ ++ + +ed  ++r+W++k+++  ++ks++y+l+ ++ +Fv angL+egDf+v++   + +
  Sopen06g034980.1 442 QKVLKQSDVGHLGRIVLPKKEAESHlpQLETRDGISIAMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVVANGLQEGDFIVIYA--DmK 531
                       79*************************99999*********7778*******99777777777777.********************5..448 PP

                       EE..EEE CS
                B3  89 efelvvk 95 
                       +++++++
  Sopen06g034980.1 532 CGKYLIR 538
                       8877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.5E-27435545IPR015300DNA-binding pseudobarrel domain
CDDcd100156.56E-34439540No hitNo description
SuperFamilySSF1019364.45E-22440533IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.4E-19441543IPR003340B3 DNA binding domain
PROSITE profilePS5086310.306441543IPR003340B3 DNA binding domain
PfamPF023621.1E-16442537IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MKRELNEVYY GGNKEDVHGF ENINMVPTDF DPMDDTDIWL NGNFSNDFTS LQDFPCMSSS  60
SSTSNSLPTE QSDPSSSWAV QKSDADEQDF DTISDQECLN VMDLIDGDHE FLDPMISFLN  120
QQQKEQANDE QVSIFQGDSE LALMFLDWLK QNKDNISAED MRSIKLKRST IESASKRLGS  180
TKEGKKQLLR LILDWVEQHR FQKKQMREEQ SIQNSAPFNF TNPNACFYNA SFTDSSSVMT  240
GPVQGYFGDL NSNGSLFVPP YNQTTSGSST SQSQFTMANA AQYNRFPEND ITNNVAIPDQ  300
PLFSAQYDQY QIFDGNGERL ARLGTCATKE ARKIRMARQR RVPLHHYRHQ TQNQRQISNE  360
KSVMMGRKIN NCAISQANNP GTWVYWPCAA AAPPIAMVPL ADTPQSLPME RSPVQSQKHQ  420
KHGSTDKRQA CKTEKNLKFL MQKVLKQSDV GHLGRIVLPK KEAESHLPQL ETRDGISIAM  480
EDIGTSRVWN MKYRFWPNNK SRMYLLENTG DFVVANGLQE GDFIVIYADM KCGKYLIRGV  540
KVRPNGAKSD GNQPAKKIVR KIAAVASSPF AQAVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-374375411105B3 domain-containing transcription factor FUS3
6j9b_D2e-374375411105B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078992.10.0B3 domain-containing transcription factor ABI3-like
TrEMBLA0A3Q7H5E20.0A0A3Q7H5E2_SOLLC; Uncharacterized protein
STRINGSolyc06g083590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-112B3 family protein