PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g033890.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 469aa    MW: 52948.3 Da    PI: 9.1513
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g033890.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding347e-11419467247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       ++W+  E+e l  +v+++G g+Wk I +t +     Rt+ ++k++w++ 
  Sopen06g033890.1 419 MKWSSLEEETLRAGVRKYGIGNWKFILNTYPnifSVRTATDLKDKWRNM 467
                       58********************************77***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.456413469IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-11415468IPR009057Homeodomain-like
SuperFamilySSF466894.91E-14415468IPR009057Homeodomain-like
SMARTSM007170.0094417469IPR001005SANT/Myb domain
PfamPF002491.4E-7419467IPR001005SANT/Myb domain
CDDcd116606.11E-18420468No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MLLRMDIDTD ISHWILEFIL RQPLDDSVLN GFIHVLPLPN DKPNLKKALL IRKIESEISN  60
GSVNEKILDF LELIEELNYQ DGIEASDVMK AAYCAVAVEC TVKFLNSEGT GGDKGKYFDA  120
VRRIWKRKIN LTEKLENVGF VSEELWNWRD EIEAALWDDK CSYSVIRKSK AIVAVESVKF  180
FVREAKERTG SPFLDVVAEA YQSDETMETL FGGLNKEGAR RKNNREVSKG TALRRKKHVA  240
FKRTREGVRI NDSTELELKA SGGGGQDGLP SSAEIHKAEK ALKLSSLELR AMVKDPLPEA  300
LGYAETLSHL ARDNMGHQPA GNSSDRAPPP MAFSSRLFQA SGDKCEAQHN FHHSAASKPD  360
QLNQNTTSNP IELDDFLDKL TEGSPSKANR VTLPTPKTVR VSPLKKYEYK KITTRRKVMK  420
WSSLEEETLR AGVRKYGIGN WKFILNTYPN IFSVRTATDL KDKWRNMIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127RRIWKRK
2219236RRKNNREVSKGTALRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077447.10.0uncharacterized protein LOC107021323
TrEMBLA0A3Q7HXX20.0A0A3Q7HXX2_SOLLC; Uncharacterized protein
STRINGSolyc06g082510.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-25MYB_related family protein