PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g031750.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 198aa    MW: 21892.9 Da    PI: 6.4852
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g031750.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.44.5e-42351341100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+
  Sopen06g031750.1  35 PCAACKILRRRCAEKCVLAPYFPPSEPIKFTIAHRVFGASNIIKFLQELPEYQRADAVSSMVYEANARMRDPVYGSAGAICQLQKQVNELQAQ 127
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  Sopen06g031750.1 128 LAKTQAE 134
                       ***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.87934135IPR004883Lateral organ boundaries, LOB
PfamPF031959.0E-4235132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MESNNTTITT TTPSSPCSVL PPTNSPSPPR VVATPCAACK ILRRRCAEKC VLAPYFPPSE  60
PIKFTIAHRV FGASNIIKFL QELPEYQRAD AVSSMVYEAN ARMRDPVYGS AGAICQLQKQ  120
VNELQAQLAK TQAELVNIQC QQANLMAFVY MEMGPSPPTS PQQSLDKFIN STTHDTIQNN  180
MSFLDENNNY GTLETLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-42331429118LOB family transfactor Ramosa2.1
5ly0_B5e-42331429118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079078.11e-146LOB domain-containing protein 1-like
SwissprotQ9SK089e-68LBD11_ARATH; LOB domain-containing protein 11
TrEMBLM1AC131e-130M1AC13_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000194101e-131(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.12e-69LOB domain-containing protein 11