PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g030390.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 265aa    MW: 30756.6 Da    PI: 9.0921
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g030390.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-1530119299
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       fk++  +      +l++p  f++ ++g+   +   +led+  r+W+v +  +k+++ +++ + W +Fv  n+L+ gDf++F++ g+s+f  +v
  Sopen06g030390.1  30 FKIF--HPEICYPQLRIPPAFIKFFNGD--IPSICVLEDLAARTWKVVV--EKNDSDFFFMESWPDFVLYNNLEYGDFLTFSYAGNSKF--YV 114
                       5555..555555689*******998766..45579**************..******99**************************9999..99 PP

                       EEE-S CS
                B3  95 kvfrk 99 
                       k++ k
  Sopen06g030390.1 115 KIYGK 119
                       99876 PP
2B335.22.2e-11172263499
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       + +++++l+++rl +p +f + + + k+++ + tl++ ++ sW++     ++ +r  l++G ++F ++n L+++D++ Fkl+++++  l+v++
  Sopen06g030390.1 172 IVIKASHLNRARLNFPAPFGNCYLKRKKRPLMATLRT-DSGSWTIVP---QYYDRLELREGMQKFIDDNALRVNDVCRFKLIDDEKLILKVRI 260
                       567889999***********88866667887777666.7779***99...3445677*************************99999888888 PP

                       E-S CS
                B3  97 frk 99 
                        r+
  Sopen06g030390.1 261 KRQ 263
                       775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.61E-2322122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-1923122IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-1527117No hitNo description
SMARTSM010194.3E-1429120IPR003340B3 DNA binding domain
PfamPF023629.3E-1439119IPR003340B3 DNA binding domain
PROSITE profilePS5086311.99842120IPR003340B3 DNA binding domain
SuperFamilySSF1019361.94E-11166262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-10166258IPR015300DNA-binding pseudobarrel domain
CDDcd100176.53E-7169262No hitNo description
PROSITE profilePS508638.487169264IPR003340B3 DNA binding domain
SMARTSM010196.8E-7170264IPR003340B3 DNA binding domain
PfamPF023628.3E-9172263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MRFRQRKKVN NKMVTPVEHV SIPHDLPEFF KIFHPEICYP QLRIPPAFIK FFNGDIPSIC  60
VLEDLAARTW KVVVEKNDSD FFFMESWPDF VLYNNLEYGD FLTFSYAGNS KFYVKIYGKN  120
GCLKEDVTAL KEPELLPLVE EKARGKSIVA EPADQTDNGS GDMASSVTSF EIVIKASHLN  180
RARLNFPAPF GNCYLKRKKR PLMATLRTDS GSWTIVPQYY DRLELREGMQ KFIDDNALRV  240
NDVCRFKLID DEKLILKVRI KRQPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194200LKRKKRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-172HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077668.10.0B3 domain-containing protein REM5-like
RefseqXP_015077669.10.0B3 domain-containing protein REM5-like
TrEMBLA0A3Q7H0A30.0A0A3Q7H0A3_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000151910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126331320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-19B3 family protein