PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g030080.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 870aa    MW: 98992 Da    PI: 6.6998
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g030080.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.71.1e-0959127190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fY+eYA+++GF++r+ + ++        k +f C k g r+ + ++              C+a+l+v+++ ++kw+vtk +++H H+l+
  Sopen06g030080.1  59 NFYDEYARRLGFNTRVFQFNRL-------KTDFLCDKVGLRRVSGES--------------CDAMLRVELKGQNKWVVTKYVKDHCHSLV 127
                       6***************998876.......789*********998877..............**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-659127IPR004330FAR1 DNA binding domain
PfamPF105513.8E-26265356IPR018289MULE transposase domain
PROSITE profilePS5096611.214543579IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-9543577IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-6554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MDVEEGNMNQ QGGITDDGDD EPSESGEANV NGRSNAPDGD NIVEPQMGMV FLSADQAKNF  60
YDEYARRLGF NTRVFQFNRL KTDFLCDKVG LRRVSGESCD AMLRVELKGQ NKWVVTKYVK  120
DHCHSLVYPN KVHHQRSHKH FAVTKKKVPE NNQGVGVVPS GVMYVSVDCN RIPVEMNHGA  180
KRTRPEESDQ TVKNSTLQGF SPRHCNQRRT LGRDAQNLLD YFKKMQAENP GFYYAIQLDE  240
DNRMSSVFWA DARSRNAYSH FGDAVILDTM YRVNQCKVPF APLTGVNHHG QAILFGCALL  300
LDESEATFVW LFKTFLAAMN DRAPVSLITD QDTVIQSAVS QVFPETRHCI NKWHVLRAGQ  360
DRMSHVCHMF PNFQVELYNC INLTETVEEF ESYWEMILDK YDLKKNDWLQ SIYNTRRQWA  420
PVYFRDTFFA AVSPNQEYEC SFFDGYVSQQ ITLPLFFRQY ERALENSFEK ETEADFDTIC  480
TTPPLKTPSP MEKQAATLYT KKIFLKFQEE LVETFVYTAN RIDGDGVIST FRVAKFEDDQ  540
KAYLVSLNIS ELKANCSCQM FECSGILCRH ILTVFTVTNI LTLPSHYILK RWTINAKCGA  600
ESDEHVQLHD TESMARRYNS LCREAIRCAE EGAVSQETYN AALGALKEGG KKVALAKRNV  660
SKVSPPRSQA SCVGYDDRRT STSASEMTPL LWPRQDEMTK RFNLNDTGSP AQAVADLNPQ  720
RMAPVSLHRD DGHADNMVIL PCLKSMTWVM ENKTSAPANR VAVINLKLQD YSRTPSRESE  780
VKFQLSQVTL EPMMKSMAYI SEQLSAPANR VAVINLKLQD TETTSGESEV KFQVSRDTLG  840
AMLRSMAYIR EQLSNTVESQ LEIPAKKQRK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079540.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A3Q7H2V10.0A0A3Q7H2V1_SOLLC; Uncharacterized protein
STRINGXP_009776131.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]