PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g029570.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 125aa MW: 14981.2 Da PI: 10.3002

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g029570.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.6	4.7e-14	5	48	48	91
FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +ek r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Sopen06g029570.1 5 REKIVRQRAETRVGCRAMILVRKISSGKWVVTKFVKEHSHPLCP 48 367889************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-11	6	48	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MPDKREKIVR QRAETRVGCR AMILVRKISS GKWVVTKFVK EHSHPLCPGK GRRDLIYDQY 60 PNEHDKIREL SQQLAAEKKR SATYKRHLEM IFEHIEEHNQ SLSKKIQDIV HNVRELESRD 120 EHHHR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-105	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004241418.1	1e-87	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_015077850.1	1e-87	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0V0HLI0	8e-86	A0A0V0HLI0_SOLCH; Uncharacterized protein
TrEMBL	M1CKJ5	8e-86	M1CKJ5_SOLTU; Uncharacterized protein
STRING	Solyc06g073200.2.1	1e-87	(Solanum lycopersicum)
STRING	PGSC0003DMT400069495	1e-86	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11568	23	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	9e-66	FAR1 family protein