PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen06g029270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 236aa MW: 25749.5 Da PI: 5.7302 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.8 | 5.7e-16 | 19 | 79 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Sopen06g029270.1 19 RSRWNPKPEQIVILESIFNSgMVNPRKDETVRIRKMLeqfgAVGDANVFYWFQNRRSRSRR 79 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 107.8 | 6.4e-35 | 18 | 81 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q Sopen06g029270.1 18 VRSRWNPKPEQIVILESIFNSGMVNPRKDETVRIRKMLEQFGAVGDANVFYWFQNRRSRSRRRQ 81 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.13E-14 | 13 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.305 | 15 | 80 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-8 | 16 | 84 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.8E-5 | 17 | 84 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-13 | 19 | 79 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MDDDSSSSSQ SCERNETVRS RWNPKPEQIV ILESIFNSGM VNPRKDETVR IRKMLEQFGA 60 VGDANVFYWF QNRRSRSRRR QRQIQASLSA VSNSNEEQSA RSSDGGAIQF QTNFVPSSVS 120 SSSSSSLGGG VGNANDGLFL FSGPMGIDQN SSITSILCSA TDNSNLNCSS SGFITVFING 180 VAAQVPRGPL DMKAMFGPED LVLYHSSGVP LPVNEYGFVV QSLQHGESYF LLRHEA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00330 | DAP | Transfer from AT3G03660 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027773416.1 | 1e-173 | WUSCHEL-related homeobox 11 isoform X2 | ||||
Swissprot | Q6X7J3 | 1e-63 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | M1CKL7 | 1e-133 | M1CKL7_SOLTU; Uncharacterized protein | ||||
STRING | Solyc06g072890.1.1 | 1e-135 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6166 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03660.1 | 5e-63 | WUSCHEL related homeobox 11 |
Publications ? help Back to Top | |||
---|---|---|---|
|