PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g025470.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 404aa    MW: 46317.4 Da    PI: 5.7551
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g025470.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.93e-2259140289
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       fYn YAk  GF vr+s++ ++ +++e ++ ++ Cs+ g++++++ +     ++r+etrtgC a++k +++++++w+++++eleHnH +
  Sopen06g025470.1  59 FYNCYAKAYGFGVRVSNTWYR-KSRERYRGKLSCSNAGFKKKSEAN-----QPRPETRTGCPAMIKFRLTENKRWRIIEVELEHNHLI 140
                       9***************99997.66679**************99888.....9**********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-1959140IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.161313349IPR007527Zinc finger, SWIM-type
SMARTSM005750.0014324351IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDGLSLNAAI FEDETEEFDI DGECAMTEYA GHSGVLEGEN PVHPNLGMEF ETYEDVYYFY  60
NCYAKAYGFG VRVSNTWYRK SRERYRGKLS CSNAGFKKKS EANQPRPETR TGCPAMIKFR  120
LTENKRWRII EVELEHNHLI HPSTEKFYKS HRNNSSGRRR PLQMTGNQEN QKIRLFRTVI  180
IDPDDDGQLN IDEGEFRNMI DQSNNHLILK PGDAQAILSF FTDLQLVNPD FFYVMDLNDV  240
CGMCSGRKQD TVIIDQSSAM QTAIADVLPR ASHCISLSHI MKKVPEELGI DGSIMIYIVK  300
DSKVENVNEA KDYEVTFNTA VADVLCECGL FNLKGFLCRH TLCVLSQNGF KEIPPQYILS  360
RWRMDIHRSY VLDYGCNFIN TKNPVHSLIS DMWTIGSHDI NSIF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773498.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A1U7VZI01e-147A0A1U7VZI0_NICSY; protein FAR1-RELATED SEQUENCE 6-like
STRINGSolyc06g068200.1.11e-162(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-47FAR1-related sequence 6