PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g023610.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 284aa    MW: 31632 Da    PI: 8.8705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g023610.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l+++++ +G g+W++ ++  g+ R++k+c++rw +yl
  Sopen06g023610.1 14 KGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLSRCGKSCRLRWINYL 61
                      79********************************************97 PP
2Myb_DNA-binding58.91.1e-1867111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++T+eEdel+++++ +lG++ W+ Ia +++ gRt++++k++w+++
  Sopen06g023610.1  67 RGNFTEEEDELIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 111
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.832961IPR017930Myb domain
SMARTSM007172.4E-141363IPR001005SANT/Myb domain
SuperFamilySSF466892.36E-3013108IPR009057Homeodomain-like
PfamPF002497.9E-161461IPR001005SANT/Myb domain
CDDcd001679.59E-111661No hitNo description
PROSITE profilePS5129428.49962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2865117IPR009057Homeodomain-like
SMARTSM007177.9E-1866114IPR001005SANT/Myb domain
PfamPF002496.6E-1767111IPR001005SANT/Myb domain
CDDcd001677.86E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090378Biological Processseed trichome elongation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLINYIR AHGEGCWRSL PKAAGLSRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK LHSLLGNKWS VIAGRLPGRT DNEIKNYWNT HIKRKLISRG  120
IDPQTHRPLN NTATNSHTTT TITTAVTTTT TTTKNINLDF TNVDQKQPSI MIATSSSYDE  180
TKCNSGTTEE TKPLEIIIPK IPSQVMINLE LSIGLPLHTD HISSPESTAS YNFLTTVAPP  240
TTAAVPAAEM VAKTVCLCWQ IGYQGGGGQW CGKCKNTNGF YRYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30141167108B-MYB
1h8a_C2e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077307.10.0myb-related protein 330-like
SwissprotP813951e-106MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A3Q7HS250.0A0A3Q7HS25_SOLLC; Uncharacterized protein
STRINGSolyc06g065100.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-88myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]