PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g017870.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 368aa    MW: 41480.1 Da    PI: 4.5985
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g017870.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19131180255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Sopen06g017870.1 131 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 180
                       89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-29130187IPR001471AP2/ERF domain
PfamPF008479.9E-13131180IPR001471AP2/ERF domain
PROSITE profilePS5103223.657131188IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-21131187IPR016177DNA-binding domain
CDDcd000183.70E-33131187No hitNo description
SMARTSM003809.2E-38131194IPR001471AP2/ERF domain
PRINTSPR003674.2E-10132143IPR001471AP2/ERF domain
PRINTSPR003674.2E-10154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDHHSSLCPI KYTEHKRTIR KVTKPSIIKP KKVSDIRKSS EYNPTIPRTV RICVTDPDAT  60
DSSSDEDELF GRKRVKRYIS EISIESQSIN DVKTLSSGNG KKRVAEGSQA KQKALKGKEV  120
VQLPADKTVR KFRGVRQRPW GKWAAEIRDP ARRVRLWLGT YDTAEEAAMV YDNAAIKLRG  180
PDALTNFITP PIKEKPEVNV ASNSGYESGD ESHNLSSPTS VLRFRTSESS EEAEQQSVSG  240
SEPILQDIKE NCTVLVEEPN SEQNVEHLEC QGETLTVIPD YSNEYLPTDV SFLDDYFNFA  300
DAEQSLFNDT TSFTNDDLFS SWDFTNDFVL DPEICKYDDS FLDLGALEVD NYFKDIGDFS  360
SVDVLMAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21130187159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078059.10.0ethylene-responsive transcription factor CRF4-like
TrEMBLM0ZQQ90.0M0ZQQ9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000060410.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-65cytokinin response factor 4